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SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_EXPT_500_BF_STEP10_unknown_33_6
In projects: SCNPILOT_EXPT_500_BF_STEP10

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_expt_500_bf_step10_UNK

Properties

Avg. coverage: 5.84 Longest contig: 82.07 Kbp Bin length: 61.23 Mbp GC content: 33.00 %
Contigs count: 8385 Features count: 70688 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 35 BSCG 20 / 51 MC: 9 ASCG 28 / 38 MC: 22
Displaying items 1-50 of 8385 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_bf_scaffold_413
Domain: Metazoa (57.14%)
105 82070 bp 34.16 6.15 60.54
SCNpilot_expt_500_bf_scaffold_914 103 73301 bp 33.45 6.00 53.76
SCNpilot_expt_500_bf_scaffold_393 96 79270 bp 33.19 5.88 49.90
SCNpilot_expt_500_bf_scaffold_502 94 77763 bp 33.25 5.93 50.40
SCNpilot_expt_500_bf_scaffold_718 90 63808 bp 32.58 5.99 55.78
SCNpilot_expt_500_bf_scaffold_776
Domain: Metazoa (57.14%)
84 60592 bp 34.58 6.09 49.20
SCNpilot_expt_500_bf_scaffold_1427 83 67135 bp 33.45 5.75 51.00
SCNpilot_expt_500_bf_scaffold_659 69 46976 bp 33.03 5.90 60.89
SCNpilot_expt_500_bf_scaffold_471 69 52466 bp 34.11 5.78 57.44
SCNpilot_expt_500_bf_scaffold_482 68 48232 bp 33.18 5.77 54.57
SCNpilot_expt_500_bf_scaffold_656
Domain: Metazoa (58.21%)
67 48047 bp 34.27 5.69 53.24
SCNpilot_expt_500_bf_scaffold_619 66 47324 bp 35.68 5.72 59.14
SCNpilot_expt_500_bf_scaffold_370 66 47344 bp 33.08 6.42 52.08
SCNpilot_expt_500_bf_scaffold_781 65 55058 bp 31.96 6.00 44.14
SCNpilot_expt_500_bf_scaffold_583 65 54619 bp 33.41 6.07 50.63
SCNpilot_expt_500_bf_scaffold_402 65 55955 bp 33.33 5.88 45.45
SCNpilot_expt_500_bf_scaffold_2101 63 46022 bp 33.46 5.99 52.18
SCNpilot_expt_500_bf_scaffold_678 63 52347 bp 33.44 5.79 46.40
SCNpilot_expt_500_bf_scaffold_975 63 50116 bp 31.83 6.17 45.28
SCNpilot_expt_500_bf_scaffold_1187 62 53690 bp 32.70 5.83 41.07
SCNpilot_expt_500_bf_scaffold_1113 61 55026 bp 32.87 5.82 47.14
SCNpilot_expt_500_bf_scaffold_1196 61 42774 bp 34.64 6.21 52.04
SCNpilot_expt_500_bf_scaffold_1874 59 43166 bp 32.49 6.08 51.05
SCNpilot_expt_500_bf_scaffold_2031 58 53635 bp 33.00 5.93 53.65
SCNpilot_expt_500_bf_scaffold_827 58 50311 bp 32.39 5.93 59.98
SCNpilot_expt_500_bf_scaffold_597 58 44309 bp 33.65 5.86 51.81
SCNpilot_expt_500_bf_scaffold_2169 58 38377 bp 32.21 6.10 46.17
SCNpilot_expt_500_bf_scaffold_472 58 43509 bp 34.46 6.25 49.54
SCNpilot_expt_500_bf_scaffold_505 57 42875 bp 32.54 6.16 41.06
SCNpilot_expt_500_bf_scaffold_1132
Domain: Metazoa (61.4%)
57 41161 bp 32.65 6.06 49.87
SCNpilot_expt_500_bf_scaffold_901 57 44312 bp 32.15 6.03 42.81
SCNpilot_expt_500_bf_scaffold_1118 56 47993 bp 31.96 5.45 45.83
SCNpilot_expt_500_bf_scaffold_909 56 35549 bp 33.57 6.48 53.36
SCNpilot_expt_500_bf_scaffold_1170 56 54025 bp 33.54 5.78 44.60
SCNpilot_expt_500_bf_scaffold_434 56 35217 bp 32.21 5.43 56.19
SCNpilot_expt_500_bf_scaffold_1578 55 43296 bp 31.74 5.84 46.12
SCNpilot_expt_500_bf_scaffold_981 55 46692 bp 31.92 5.62 46.54
SCNpilot_expt_500_bf_scaffold_1428 54 43767 bp 33.92 6.00 44.49
SCNpilot_expt_500_bf_scaffold_1072
Domain: Metazoa (64.15%)
53 36914 bp 33.82 5.83 54.03
SCNpilot_expt_500_bf_scaffold_952
Domain: Metazoa (52.83%)
53 30873 bp 32.90 6.34 62.32
SCNpilot_expt_500_bf_scaffold_1355 52 32765 bp 37.15 5.78 67.92
SCNpilot_expt_500_bf_scaffold_2340
Domain: Metazoa (59.62%)
52 37010 bp 36.56 5.92 61.28
SCNpilot_expt_500_bf_scaffold_1188 52 42320 bp 33.55 6.05 56.55
SCNpilot_expt_500_bf_scaffold_1015
Domain: Metazoa (58.82%)
51 35435 bp 32.25 5.51 57.15
SCNpilot_expt_500_bf_scaffold_506 51 36751 bp 32.04 5.96 47.98
SCNpilot_expt_500_bf_scaffold_620 51 33334 bp 33.02 6.22 57.82
SCNpilot_expt_500_bf_scaffold_1657 51 27653 bp 34.67 6.40 60.59
SCNpilot_expt_500_bf_scaffold_1191
Domain: Metazoa (54.9%)
51 38101 bp 32.03 6.25 58.96
SCNpilot_expt_500_bf_scaffold_470 51 37551 bp 33.47 6.11 44.50
SCNpilot_expt_500_bf_scaffold_381 50 37662 bp 32.70 5.94 47.86
Displaying items 1-50 of 8385 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.