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SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_EXPT_500_BF_STEP10_unknown_33_6
In projects: SCNPILOT_EXPT_500_BF_STEP10

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_expt_500_bf_step10_UNK

Properties

Avg. coverage: 5.84 Longest contig: 82.07 Kbp Bin length: 61.23 Mbp GC content: 33.00 %
Contigs count: 8385 Features count: 70688 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 35 BSCG 20 / 51 MC: 9 ASCG 28 / 38 MC: 22
Displaying items 251-300 of 8385 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_bf_scaffold_860 32 23674 bp 33.90 5.51 61.71
SCNpilot_expt_500_bf_scaffold_607 32 31104 bp 34.43 5.85 57.18
SCNpilot_expt_500_bf_scaffold_2864 32 25560 bp 32.91 6.27 58.31
SCNpilot_expt_500_bf_scaffold_2365 32 26383 bp 32.86 5.67 62.54
SCNpilot_expt_500_bf_scaffold_622 32 30212 bp 33.22 6.56 49.16
SCNpilot_expt_500_bf_scaffold_1654 32 29966 bp 32.92 5.84 55.39
SCNpilot_expt_500_bf_scaffold_1150 32 26245 bp 34.66 5.99 74.49
SCNpilot_expt_500_bf_scaffold_3306 32 28700 bp 32.32 5.99 51.01
SCNpilot_expt_500_bf_scaffold_2411 32 24386 bp 31.90 5.81 37.95
SCNpilot_expt_500_bf_scaffold_1693 32 23652 bp 34.67 6.29 61.02
SCNpilot_expt_500_bf_scaffold_1203 32 31521 bp 32.71 5.51 45.46
SCNpilot_expt_500_bf_scaffold_3105
Domain: Metazoa (53.13%)
32 28745 bp 34.00 5.88 54.34
SCNpilot_expt_500_bf_scaffold_1476 32 23588 bp 35.73 6.27 48.18
SCNpilot_expt_500_bf_scaffold_1991 32 20355 bp 32.14 6.01 42.61
SCNpilot_expt_500_bf_scaffold_970 32 20193 bp 35.38 5.86 56.02
SCNpilot_expt_500_bf_scaffold_5093 32 30282 bp 33.06 6.47 45.59
SCNpilot_expt_500_bf_scaffold_1236 32 28836 bp 33.82 6.23 71.75
SCNpilot_expt_500_bf_scaffold_987 32 21968 bp 31.71 6.65 67.45
SCNpilot_expt_500_bf_scaffold_1764
Domain: Metazoa (50%)
32 30172 bp 33.50 6.09 43.61
SCNpilot_expt_500_bf_scaffold_741 32 22644 bp 32.99 5.85 52.24
SCNpilot_expt_500_bf_scaffold_2487 32 22806 bp 33.27 6.00 47.78
SCNpilot_expt_500_bf_scaffold_493
Domain: Metazoa (59.38%)
32 30325 bp 34.35 5.84 49.13
SCNpilot_expt_500_bf_scaffold_757 31 24415 bp 35.08 6.17 56.46
SCNpilot_expt_500_bf_scaffold_764 31 24289 bp 34.84 5.69 59.35
SCNpilot_expt_500_bf_scaffold_1284 31 19079 bp 32.91 6.05 51.59
SCNpilot_expt_500_bf_scaffold_2006 31 31061 bp 31.85 6.05 64.31
SCNpilot_expt_500_bf_scaffold_2266 31 26521 bp 32.71 6.48 41.48
SCNpilot_expt_500_bf_scaffold_1564 31 26703 bp 33.52 5.52 38.20
SCNpilot_expt_500_bf_scaffold_2294 31 18911 bp 32.30 6.09 40.83
SCNpilot_expt_500_bf_scaffold_1837 31 22532 bp 34.42 6.60 50.47
SCNpilot_expt_500_bf_scaffold_1587 31 21047 bp 34.47 5.93 55.32
SCNpilot_expt_500_bf_scaffold_2054 31 30583 bp 30.73 5.72 47.57
SCNpilot_expt_500_bf_scaffold_2314
Domain: Metazoa (51.61%)
31 21083 bp 32.87 5.79 59.49
SCNpilot_expt_500_bf_scaffold_1616 31 26155 bp 33.06 5.87 39.93
SCNpilot_expt_500_bf_scaffold_867 31 27267 bp 32.01 6.55 42.36
SCNpilot_expt_500_bf_scaffold_891 31 19281 bp 32.78 5.87 57.32
SCNpilot_expt_500_bf_scaffold_2131 31 21801 bp 33.35 5.78 67.30
SCNpilot_expt_500_bf_scaffold_644 31 21883 bp 33.41 6.26 61.68
SCNpilot_expt_500_bf_scaffold_1450
Domain: Metazoa (67.74%)
31 18510 bp 34.17 6.16 64.85
SCNpilot_expt_500_bf_scaffold_683 31 19333 bp 33.63 5.96 57.90
SCNpilot_expt_500_bf_scaffold_2942 31 26934 bp 33.26 5.75 51.48
SCNpilot_expt_500_bf_scaffold_3342 31 25998 bp 32.76 5.02 43.00
SCNpilot_expt_500_bf_scaffold_3346 31 23819 bp 34.15 5.85 50.91
SCNpilot_expt_500_bf_scaffold_1725 31 21179 bp 32.79 5.75 47.68
SCNpilot_expt_500_bf_scaffold_3357 31 20454 bp 33.16 5.72 55.93
SCNpilot_expt_500_bf_scaffold_1477 31 22897 bp 34.79 6.15 54.44
SCNpilot_expt_500_bf_scaffold_1497 31 31798 bp 35.07 6.22 38.44
SCNpilot_expt_500_bf_scaffold_1258 31 22877 bp 34.34 5.65 50.58
SCNpilot_expt_500_bf_scaffold_1031 30 29625 bp 33.45 5.47 36.73
SCNpilot_expt_500_bf_scaffold_2526 30 22187 bp 33.00 6.24 55.13
Displaying items 251-300 of 8385 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.