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SCNpilot_expt_500_bf_scaffold_5319

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5319_1
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(120..617)
DNA (498bp) protein (166aa)
GCN5-like N-acetyltransferase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HTY2_9BURK
N-acetyltransferase GCN5
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:AFU44107.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_500_bf_scaffold_5319_2
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(672..1385)
DNA (714bp) protein (238aa)
Cytochrome B561 n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0IXG9_COMT2
Cytochrome B561 {ECO:0000313|EMBL:KGH09948.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
cytochrome B561
SCNpilot_expt_500_bf_scaffold_5319_3
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1527..1988
DNA (462bp) protein (154aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WE54_DELAC
cytochrome c prime
Cytochrome c {ECO:0000313|EMBL:KFJ13882.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
SCNpilot_expt_500_bf_scaffold_5319_4
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2113..2637)
DNA (525bp) protein (175aa)
Redoxin domain protein n=2 Tax=cellular organisms RepID=A9BPT2_DELAS
redoxin domain-containing protein
Redoxin domain protein {ECO:0000313|EMBL:ABX33051.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCNpilot_expt_500_bf_scaffold_5319_5
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2704..3435)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00031E2BC0 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEG91411.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_500_bf_scaffold_5319_6
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3598..4833)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5A2_RAMTT rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEG91412.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_500_bf_scaffold_5319_7
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4865..5569
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0003091B15
Uncharacterized protein {ECO:0000313|EMBL:EER59991.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5319_8
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5667..6224
DNA (558bp) protein (186aa)
Major facilitator superfamily MFS_1 n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6B7_ACIDE
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EER59992.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
major facilitator superfamily transporter
SCNpilot_expt_500_bf_scaffold_5319_9
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6287..6724
DNA (438bp) protein (146aa)
Candidate transporter n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5A3_RAMTT
transporter
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_500_bf_scaffold_5319_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6736..7155
DNA (420bp) protein (140aa)
pts system fructose subfamily iia component; K02821 PTS system, ascorbate-specific IIA component [EC:2.7.1.69]
PTS fructose transporter subunit IIA n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00036AAA36
Phosphotransferase system, mannose/fructose-specific component IIA {ECO:0000313|EMBL:GAD21801.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_500_bf_scaffold_5319_11
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7152..7421
DNA (270bp) protein (90aa)
Phosphocarrier protein n=2 Tax=Delftia acidovorans RepID=S2X196_DELAC
Phosphocarrier protein HPr {ECO:0000313|EMBL:EXU78614.1}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
phosphotransferase system, phosphocarrier protein HPr; K11189 phosphocarrier protein
SCNpilot_expt_500_bf_scaffold_5319_12
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7418..9172
DNA (1755bp) protein (585aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002F2B07B rbh
phosphoenolpyruvate-protein phosphotransferase
SCNpilot_expt_500_bf_scaffold_5319_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9354..10727
DNA (1374bp) protein (458aa)
tryptophanase (EC:4.1.99.1); K01667 tryptophanase [EC:4.1.99.1]
Tryptophanase {ECO:0000313|EMBL:ADV00851.1}; EC=4.1.99.1 {ECO:0000313|EMBL:ADV00851.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Tryptophanase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TYF3_ALIDB
SCNpilot_expt_500_bf_scaffold_5319_14
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10858..11583)
DNA (726bp) protein (242aa)
membrane protein id=5083508 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
membrane protein
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_500_bf_scaffold_5319_15
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11924..12838)
DNA (915bp) protein (305aa)
MFS transporter n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QXZ3_RALPI
hypothetical protein
MFS transporter {ECO:0000313|EMBL:AGW95784.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
SCNpilot_expt_500_bf_scaffold_5319_16
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12964..13662)
DNA (699bp) protein (233aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source=
lipoate-protein ligase B; K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181]
Octanoyltransferase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJQ1_9BURK
SCNpilot_expt_500_bf_scaffold_5319_17
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13659..14903)
DNA (1245bp) protein (415aa)
Type III restriction enzyme, res subunit n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WD73_ACISJ
Type III restriction enzyme, res subunit {ECO:0000313|EMBL:KJA11702.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
type III restriction enzyme, res subunit
SCNpilot_expt_500_bf_scaffold_5319_18
unknown

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16012..16272
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_5319_19
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(16485..17297)
DNA (813bp) protein (271aa)
Uncharacterized protein {ECO:0000313|EMBL:KIJ76427.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
Putative uncharacterized protein id=4578307 bin=GWF2_Lentisphaerae_57_35 species=ACD40 genus=ACD40 taxon_order=ACD40 taxon_class=ACD40 phylum=OP11 tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5319_20
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17302..18090)
DNA (789bp) protein (263aa)
DNA methylase N-4/N-6 domain protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WD74_ACISJ
DNA methylase N-4/N-6 domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Displaying 20 items

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