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SCNpilot_expt_500_bf_scaffold_3975

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3975_1
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

116..718
DNA (603bp) protein (201aa)
DsbA oxidoreductase {ECO:0000313|EMBL:CCE96416.1}; EC=2.5.1.18 {ECO:0000313|EMBL:CCE96416.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
DsbA oxidoreductase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A836_RHIFH
DsbA oxidoreductase
SCNpilot_expt_500_bf_scaffold_3975_2
Oligella urethralis, Oligella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1024..2163)
DNA (1140bp) protein (380aa)
adhB; iron-containing alcohol dehydrogenase AdhB (EC:1.1.1.-); K13954 alcohol dehydrogenase [EC:1.1.1.1] rbh
alcohol dehydrogenase n=1 Tax=Oligella urethralis RepID=UPI00036CC079 rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:KGF30100.1}; TaxID=1401065 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Oligella.;" source="Oligella urethralis DNF00040.;"
SCNpilot_expt_500_bf_scaffold_3975_3
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2356..2814
DNA (459bp) protein (153aa)
Histidine triad (HIT) protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRL8_ALIDB
Histidine triad (HIT) protein {ECO:0000313|EMBL:EXU79713.1}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
histidine triad (hit) protein; K02503 Hit-like protein involved in cell-cycle regulation
SCNpilot_expt_500_bf_scaffold_3975_4
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2811..3860
DNA (1050bp) protein (350aa)
peptidase S58 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003615FA2
L-aminopeptidase/D-esterase {ECO:0000313|EMBL:GAD24804.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
peptidase s58 dmpa
SCNpilot_expt_500_bf_scaffold_3975_5
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3857..5233
DNA (1377bp) protein (459aa)
TRAP transporter solute receptor, TAXI family n=1 Tax=Variovorax sp. CF313 RepID=J3CVS7_9BURK
trap transporter solute receptor, taxi family
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_expt_500_bf_scaffold_3975_6
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5279..6253)
DNA (975bp) protein (325aa)
ansB1; periplasmic l-asparaginase ii (EC:3.5.1.1); K05597 glutamin-(asparagin-)ase [EC:3.5.1.38]
L-asparaginase type II family protein n=1 Tax=Polaromonas sp. CF318 RepID=J2TIF4_9BURK
L-asparaginase type II family protein {ECO:0000313|EMBL:EJL78317.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
SCNpilot_expt_500_bf_scaffold_3975_7
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6328..8025)
DNA (1698bp) protein (566aa)
DEAD/DEAH box helicase domain-containing protein; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
ATP-dependent RNA helicase RhlE {ECO:0000256|HAMAP-Rule:MF_00968}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00968};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00036CDCAA
SCNpilot_expt_500_bf_scaffold_3975_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8264..9457)
DNA (1194bp) protein (398aa)
aspartyl-tRNA synthetase; K01876 aspartyl-tRNA synthetase [EC:6.1.1.12]
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:AEB83334.1}; EC=6.1.1.12 {ECO:0000313|EMBL:AEB83334.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Aspartate--tRNA ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U0X4_ALIDB
SCNpilot_expt_500_bf_scaffold_3975_9
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10053..10790)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002EBDFEC rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGJ10075.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
SCNpilot_expt_500_bf_scaffold_3975_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10814..11134)
DNA (321bp) protein (107aa)
Regulatory protein, FmdB family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CWY0_VARPS
FmdB family regulatory protein
Regulatory protein, FmdB family {ECO:0000313|EMBL:ACS20737.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_500_bf_scaffold_3975_11
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11233..12711)
DNA (1479bp) protein (493aa)
Na+/solute symporter n=1 Tax=Acidovorax sp. NO-1 RepID=H0BYF7_9BURK rbh
Na+/solute symporter
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_expt_500_bf_scaffold_3975_12
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12832..14400)
DNA (1569bp) protein (523aa)
ubiquinone biosynthesis protein UbiB n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036CE464
2-polyprenylphenol 6-hydroxylase; K03688 ubiquinone biosynthesis protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_3975_13
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14546..15088)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000364283F
hypothetical protein; K03690 hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_3975_14
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15221..15880)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0003657978
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_3975_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15877..16164)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KBF9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL70513.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3975_16
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16226..16705)
DNA (480bp) protein (160aa)
ubiquinone/menaquinone biosynthesis methyltransferase; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201]
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaph
ubiquinone/menaquinone biosynthesis methyltransferase n=1 Tax=Acidovorax radicis RepID=UPI0002377BC9
SCNpilot_expt_500_bf_scaffold_3975_17
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17021..18673
DNA (1653bp) protein (551aa)
Zn-dependent hydrolase, glyoxylase n=1 Tax=Polaromonas sp. CF318 RepID=J3D9J4_9BURK rbh
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:EJL87396.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
beta-lactamase-like protein rbh
SCNpilot_expt_500_bf_scaffold_3975_18
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19125..19289)
DNA (165bp) protein (55aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000369144F
Uncharacterized protein {ECO:0000313|EMBL:GAD23858.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3975_19
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19996..20316
DNA (321bp) protein (107aa)
Cysteine synthase n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y7E9_9BURK
similar to C17G1.7
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_expt_500_bf_scaffold_3975_20
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20408..20815
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036CBFAB
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_500_bf_scaffold_3975_21
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20900..22243
DNA (1344bp) protein (448aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;
(dimethylallyl)adenosine tRNA methylthiotransferase n=1 Tax=Brachymonas chironomi RepID=UPI00036E11E5 rbh
miaB; tRNA-i(6)A37 modification enzyme MiaB; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA rbh
SCNpilot_expt_500_bf_scaffold_3975_22
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22411..23955
DNA (1545bp) protein (515aa)
monosaccharide-transporting ATPase (EC:3.6.3.17); K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRM2_ALIDB
Sugar ATP binding protein {ECO:0000313|EMBL:GAO27258.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_3975_23
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23942..25006
DNA (1065bp) protein (355aa)
Inner-membrane translocator n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7E9_ACIDE
Sugar ABC transporter permease {ECO:0000313|EMBL:KJA10192.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
inner-membrane translocator
SCNpilot_expt_500_bf_scaffold_3975_24
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25006..25926
DNA (921bp) protein (307aa)
Candidate Uncharacterized ABC type transport system, permease component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XY22_RAMTT rbh
ABC transporter permease {ECO:0000313|EMBL:KJA10191.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
ABC transporter permease; K02057 simple sugar transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_3975_25
unknown

Not on your lists

25926..26102
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3975_26
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26297..27274
DNA (978bp) protein (326aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI000361C439
basic membrane lipoprotein; K02058 simple sugar transport system substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_500_bf_scaffold_3975_27
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27677..28339)
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI000377082F
DSBA oxidoreductase {ECO:0000313|EMBL:KGM40078.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3975_28
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28502..29209)
DNA (708bp) protein (236aa)
alpha/beta hydrolase n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00036FB283
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:GAD23873.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
alpha/beta hydrolase fold protein
Displaying 28 items

View Taxonomy