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SCNpilot_expt_500_bf_scaffold_4138

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4138_1
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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164..1405
DNA (1242bp) protein (414aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000313|EMBL:EIK88688.1}; EC=3.5.4.25 {ECO:0000313|EMBL:EIK88688.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MHJ8_9BURK
SCNpilot_expt_500_bf_scaffold_4138_2
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1417..2370
DNA (954bp) protein (318aa)
N utilization substance protein B homolog n=1 Tax=Acidovorax sp. NO-1 RepID=H0C187_9BURK
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
nusB; N utilization substance protein B; K03625 N utilization substance protein B
SCNpilot_expt_500_bf_scaffold_4138_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2367..3341
DNA (975bp) protein (325aa)
aminotransferase n=1 Tax=Curvibacter lanceolatus RepID=UPI0003674F0B
putative aminotransferase
Putative aminotransferase {ECO:0000313|EMBL:AGU50268.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_500_bf_scaffold_4138_4
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3346..3558
DNA (213bp) protein (71aa)
Aspartate/tyrosine/aromatic aminotransferase n=1 Tax=Polaromonas sp. CF318 RepID=J3CXM0_9BURK
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:EJL80544.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
aminotransferase
SCNpilot_expt_500_bf_scaffold_4138_5
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3574..3990
DNA (417bp) protein (139aa)
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395CFBE
tol-pal system-associated acyl-CoA thioesterase
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_expt_500_bf_scaffold_4138_6
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3987..4700
DNA (714bp) protein (238aa)
tolQ; biopolymer transport protein; K03562 biopolymer transport protein TolQ
protein TolQ; K03562 biopolymer transport protein TolQ id=12551108 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_expt_500_bf_scaffold_4138_7
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4744..5115
DNA (372bp) protein (124aa)
TolR protein n=2 Tax=Sutterella wadsworthensis RepID=E7H3M2_9BURK
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:KDB52361.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
TolR-like translocation protein; K03560 biopolymer transport protein TolR
SCNpilot_expt_500_bf_scaffold_4138_8
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5126..6202
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003663B9D
TonB-like protein; K03646 colicin import membrane protein
TonB-like {ECO:0000313|EMBL:ABD68895.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCNpilot_expt_500_bf_scaffold_4138_9
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6324..6767)
DNA (444bp) protein (148aa)
glyoxalase I n=1 Tax=Variovorax paradoxus RepID=UPI000370810E
Lactoylglutathione lyase {ECO:0000313|EMBL:EGI77172.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
lactoylglutathione lyase
SCNpilot_expt_500_bf_scaffold_4138_10
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7171..8217
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes OT 69 RepID=U3H5Q5_PSEAC rbh
dctP; putative TRAP dicarboxylate transporter subunit DctP rbh
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_expt_500_bf_scaffold_4138_11
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8326..8868
DNA (543bp) protein (181aa)
Putative TRAP dicarboxylate transporter subunit DctQ n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6AT80_PSERE
dctQ; putative TRAP dicarboxylate transporter subunit DctQ
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
SCNpilot_expt_500_bf_scaffold_4138_12
unknown

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comp(9278..9415)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4138_13
unknown

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comp(9584..9718)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4138_14
Pseudomonas sp. AAC, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9763..10137
DNA (375bp) protein (125aa)
TRAP C4-dicarboxylate transport system permease n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HNQ5_PSEUO
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:KES23255.1}; TaxID=1502784 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. AAC.;"
dctM; putative TRAP dicarboxylate transporter subunit DctM
SCNpilot_expt_500_bf_scaffold_4138_15
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10205..11740)
DNA (1536bp) protein (512aa)
long-chain-fatty-acid CoA ligase (EC:6.2.1.3); K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
AMP-dependent synthetase and ligase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQY4_9BURK rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EIK91624.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
SCNpilot_expt_500_bf_scaffold_4138_16
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11943..12767)
DNA (825bp) protein (275aa)
metallophosphatase n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034CB81E
metallophosphoesterase
Tax=BJP_IG2103_Rhodocyclales_63_50
SCNpilot_expt_500_bf_scaffold_4138_17
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12771..13547)
DNA (777bp) protein (259aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VLM8_POLNA rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABM36556.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_expt_500_bf_scaffold_4138_18
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13688..14008)
DNA (321bp) protein (107aa)
hypothetical protein id=5079433 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
ankyrin repeat-containing protein
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_500_bf_scaffold_4138_19
unknown

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14668..14940
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4138_20
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14895..15494)
DNA (600bp) protein (200aa)
RNA polymerase sigma factor, sigma-70 family id=1261993 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
ECF subfamily RNA polymerase sigma-24 subunit
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_500_bf_scaffold_4138_21
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15552..16412)
DNA (861bp) protein (287aa)
Uncharacterized protein id=1261994 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_500_bf_scaffold_4138_22
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16533..16814
DNA (282bp) protein (94aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WPZ1_9BURK
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Displaying 22 items

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