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SCNpilot_expt_500_bf_scaffold_1151

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1151_1
unknown

Not on your lists

comp(1..327)
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1151_2
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(324..1472)
DNA (1149bp) protein (383aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2L1_9SPHN rbh
Secretory lipase {ECO:0000313|EMBL:KGB56358.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
secretory lipase
SCNpilot_expt_500_bf_scaffold_1151_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1521..2435)
DNA (915bp) protein (305aa)
Transcriptional regulator n=1 Tax=Caulobacter sp. AP07 RepID=J2P4C2_9CAUL rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:AJP70861.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_1151_4
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2525..2968)
DNA (444bp) protein (148aa)
Glutathione-dependent formaldehyde-activating enzyme (GFA) n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3H7F2_9RHIZ
Glutathione-dependent formaldehyde-activating enzyme (GFA) {ECO:0000313|EMBL:EPE94837.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1151_5
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2994..3458)
DNA (465bp) protein (155aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S0R2_RHIET
activator of Hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:AGS20941.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_500_bf_scaffold_1151_6
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3455..3784)
DNA (330bp) protein (110aa)
Regulatory protein ArsR n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HZK3_9RHIZ
Regulatory protein ArsR {ECO:0000313|EMBL:EHK53810.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
transcriptional regulator protein
SCNpilot_expt_500_bf_scaffold_1151_7
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3954..4247
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DA9F1C
Uncharacterized protein {ECO:0000313|EMBL:AHE52364.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1151_8
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4770..5189
DNA (420bp) protein (140aa)
thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
thioesterase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B78EEE
Thioesterase superfamily protein {ECO:0000313|EMBL:EZP81874.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
SCNpilot_expt_500_bf_scaffold_1151_9
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5282..5467
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GWF3_SPHAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF52019.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_1151_10
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5476..6411
DNA (936bp) protein (312aa)
cation transporter n=1 Tax=Sphingomonas melonis RepID=UPI00037C63D3 rbh
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EIZ78515.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
cation efflux protein rbh
SCNpilot_expt_500_bf_scaffold_1151_11
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6451..6786)
DNA (336bp) protein (112aa)
UPI0003CE7873 related cluster n=1 Tax=unknown RepID=UPI0003CE7873
Uncharacterized protein {ECO:0000313|EMBL:AHE52770.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1151_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7395..8672)
DNA (1278bp) protein (426aa)
amidohydrolase; K01451 hippurate hydrolase [EC:3.5.1.32]
peptidase M20 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031A0911 rbh
Peptidase M20 {ECO:0000313|EMBL:AJP70862.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_1151_13
Asticcacaulis sp. YBE204, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8730..9326
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. YBE204 RepID=V4QI53_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ78868.1}; TaxID=1282363 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. YBE204.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1151_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9348..9971)
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037E8D1B
Uncharacterized protein {ECO:0000313|EMBL:AJP74194.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1151_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9988..10773)
DNA (786bp) protein (262aa)
cytochrome C biogenesis protein CcmE n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC9F0 rbh
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:AJP70863.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
3-hydroxybutyrate dehydrogenase
SCNpilot_expt_500_bf_scaffold_1151_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10783..11922)
DNA (1140bp) protein (380aa)
membrane protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630FD9 rbh
Membrane protein {ECO:0000313|EMBL:AJP70864.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
patatin
SCNpilot_expt_500_bf_scaffold_1151_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12039..12938
DNA (900bp) protein (300aa)
zinc metalloprotease n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E06042 rbh
Zinc metalloprotease {ECO:0000313|EMBL:AJP74195.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
zinc metallopeptidase; K07054 rbh
SCNpilot_expt_500_bf_scaffold_1151_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12998..13747
DNA (750bp) protein (250aa)
Putative hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) n=1 Tax=Sphingomonas sp. S17 RepID=F3WZI5_9SPHN
Alpha/beta hydrolase {ECO:0000313|EMBL:AJP70866.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative alpha/beta hydrolase
SCNpilot_expt_500_bf_scaffold_1151_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13732..14514
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630FDE
Uncharacterized protein {ECO:0000313|EMBL:AJP74196.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TPR repeat protein
SCNpilot_expt_500_bf_scaffold_1151_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14820..15275
DNA (456bp) protein (152aa)
Lactoylglutathione lyase {ECO:0000313|EMBL:GAO56786.1}; EC=4.4.1.5 {ECO:0000313|EMBL:GAO56786.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
gloA; lactoylglutathione lyase (EC:4.4.1.5); K01759 lactoylglutathione lyase [EC:4.4.1.5]
UPI0003CFFFDA related cluster n=1 Tax=unknown RepID=UPI0003CFFFDA
SCNpilot_expt_500_bf_scaffold_1151_21
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15323..16303
DNA (981bp) protein (327aa)
2-nitropropane dioxygenase (EC:1.13.12.16); K00459 nitronate monooxygenase [EC:1.13.12.16]
2-nitropropane dioxygenase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248BE9E
Putative nitronate monooxygenase {ECO:0000313|EMBL:GAO40046.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_expt_500_bf_scaffold_1151_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16313..17035
DNA (723bp) protein (241aa)
Hydroxyacylglutathione hydrolase {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352}; EC=3.1.2.6 {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352};; Glyoxalase II {ECO:0000256|HAMAP-Rule:MF_01374}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
gloB; hydroxyacylglutathione hydrolase (EC:3.1.2.6); K01069 hydroxyacylglutathione hydrolase [EC:3.1.2.6] rbh
hydroxyacylglutathione hydrolase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003147B18 rbh
SCNpilot_expt_500_bf_scaffold_1151_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17084..17482
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002896D56
Uncharacterized protein {ECO:0000313|EMBL:AJP70869.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1151_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17494..17895
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630FE1
Uncharacterized protein {ECO:0000313|EMBL:AJP70870.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1151_25
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17924..20044)
DNA (2121bp) protein (707aa)
ptrB; protease II; K01354 oligopeptidase B [EC:3.4.21.83]
peptidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003062C3F rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU77051.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
SCNpilot_expt_500_bf_scaffold_1151_26
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20280..20591
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WGR6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ79466.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
SCNpilot_expt_500_bf_scaffold_1151_27
unknown

Not on your lists

comp(20993..21226)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1151_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21421..22713)
DNA (1293bp) protein (431aa)
ATP-dependent protease n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DC8614 rbh
ATP-dependent protease ATPase subunit HslU {ECO:0000256|SAAS:SAAS00089650}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hslU; ATP-dependent protease ATP-binding subunit HslU; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU
SCNpilot_expt_500_bf_scaffold_1151_29
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22775..23956)
DNA (1182bp) protein (394aa)
D-amino acid oxidase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WGA7_9SPHN rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:KGB53690.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
FAD dependent oxidoreductase rbh
SCNpilot_expt_500_bf_scaffold_1151_30
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24009..24398)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD004
Uncharacterized protein {ECO:0000313|EMBL:KFL48463.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
Displaying items 1-30 of 42 in total

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