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SCNpilot_expt_500_bf_scaffold_1705

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1705_1
Burkholderia ubonensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..637)
DNA (636bp) protein (212aa)
amino acid adenylation protein n=1 Tax=Pseudomonas pyrrocinia RepID=UPI0002FD9AEC
Linear gramicidin synthase subunit D {ECO:0000313|EMBL:AJX14623.1}; TaxID=1249668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia ubonensis MSMB22.;"
Non-ribosomal peptide synthetase
SCNpilot_expt_500_bf_scaffold_1705_2
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(592..2229)
DNA (1638bp) protein (546aa)
Non-ribosomal peptide synthetase n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UC22_MYXSD
non-ribosomal peptide synthetase
Non-ribosomal peptide synthetase {ECO:0000313|EMBL:AGC44009.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
SCNpilot_expt_500_bf_scaffold_1705_3
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(2226..4052)
DNA (1827bp) protein (609aa)
Methionine--tRNA ligase (EC:6.1.1.10) rbh
Methionine--tRNA ligase n=3 Tax=Bacillus cereus RepID=C2U4T1_BACCE rbh
Uncharacterized protein {ECO:0000313|EMBL:KEO82585.1}; TaxID=1157490 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" source="Tumebacillus flagellatus.;"
SCNpilot_expt_500_bf_scaffold_1705_4
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4692..5081)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EXE3_MODMB
Membrane protein {ECO:0000313|EMBL:KHL10582.1}; TaxID=1348852 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1705_5
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5556..6749)
DNA (1194bp) protein (398aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
Two component sensor histidine kinase, AdeS n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TRP3_TISMK
baeS; two component sensor histidine kinase, AdeS
SCNpilot_expt_500_bf_scaffold_1705_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6746..7438)
DNA (693bp) protein (231aa)
chemotaxis protein CheY n=1 Tax=Martelella mediterranea RepID=UPI00037FC13E
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADU44714.1}; Flags: Precursor;; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_expt_500_bf_scaffold_1705_7
unknown

Not on your lists

7517..7750
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1705_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8389..11433
DNA (3045bp) protein (1015aa)
TonB-dependent siderophore receptor n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VPB7_CAUST rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP72610.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_500_bf_scaffold_1705_9
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11480..12937)
DNA (1458bp) protein (486aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Caulobacter sp. AP07 RepID=J2H5Y5_9CAUL rbh
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EJL38280.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
alpha/beta hydrolase rbh
SCNpilot_expt_500_bf_scaffold_1705_10
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13049..14485
DNA (1437bp) protein (479aa)
Response regulator of the LytR/AlgR family n=1 Tax=Caulobacter sp. AP07 RepID=J3AVL4_9CAUL rbh
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:EJL38279.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
response regulator receiver protein rbh
SCNpilot_expt_500_bf_scaffold_1705_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14620..17736
DNA (3117bp) protein (1039aa)
putative exoprotein n=1 Tax=Sphingomonas elodea RepID=UPI0002631048 rbh
Uncharacterized protein {ECO:0000313|EMBL:AIT06663.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1705_12
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17733..17957
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631049
DNA, contig: SP644 {ECO:0000313|EMBL:GAN14793.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1705_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17957..18334
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI000263104A
Uncharacterized protein {ECO:0000313|EMBL:ENY81221.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K09978 hypothetical protein
SCNpilot_expt_500_bf_scaffold_1705_14
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18312..19037)
DNA (726bp) protein (242aa)
prolyl 4-hydroxylase n=1 Tax=Sphingomonas wittichii RepID=UPI0002DDED60
hypothetical protein; K09990 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ66918.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_1705_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19142..19792)
DNA (651bp) protein (217aa)
Alpha-ketoglutarate-dependent dioxygenase AlkB {ECO:0000313|EMBL:EYR82234.1}; EC=1.14.11.33 {ECO:0000313|EMBL:EYR82234.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DNA-N1-methyladenine dioxygenase (EC:1.14.11.-); K03919 alkylated DNA repair protein [EC:1.14.11.-] rbh
Alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVR7_9RHIZ
SCNpilot_expt_500_bf_scaffold_1705_16
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19862..21277)
DNA (1416bp) protein (472aa)
histidine kinase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5B194
two-component hybrid sensor and regulator
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_expt_500_bf_scaffold_1705_17
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21298..21969)
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037BC0C4
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EZP49023.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
two component transcriptional regulator
SCNpilot_expt_500_bf_scaffold_1705_18
unknown

Not on your lists

comp(22002..22316)
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1705_19
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22502..22750
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037D53F9
LuxR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_500_bf_scaffold_1705_20
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22771..23100)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003608E6D
Sphingomonas taxi strain 30a NODE_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30246.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_500_bf_scaffold_1705_21
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23459..24031)
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035F1656
Sphingomonas taxi strain 30a NODE_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30196.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
NV16041; uncharacterized LOC100117075
SCNpilot_expt_500_bf_scaffold_1705_22
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24290..24874)
DNA (585bp) protein (195aa)
proline iminopeptidase; K01259 proline iminopeptidase [EC:3.4.11.5]
Proline iminopeptidase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYP2_9SPHN
Proline iminopeptidase {ECO:0000313|EMBL:ENY80372.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1705_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25403..26401)
DNA (999bp) protein (333aa)
Mandelate racemase {ECO:0000313|EMBL:AJP71201.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Mandelate racemase/muconate lactonizing enzyme id=2430538 bin=GWF1_Xanthomonadales_69_6 species=Phenylobacterium zucineum genus=Phenylobacterium taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
mandelate racemase/muconate lactonizing enzyme
SCNpilot_expt_500_bf_scaffold_1705_24
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26552..27172
DNA (621bp) protein (207aa)
transcriptional regulator n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C516
Transcriptional regulator {ECO:0000313|EMBL:KKC27406.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
FMN-binding negative transcriptional regulator; K07734 transcriptional regulator
SCNpilot_expt_500_bf_scaffold_1705_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27169..28554
DNA (1386bp) protein (462aa)
N-acyl-D-amino-acid deacylase (EC:3.5.1.82); K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000367E6B8
D-aminoacylase {ECO:0000313|EMBL:AJP74249.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_1705_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28551..28784)
DNA (234bp) protein (78aa)
Major facilitator family transporter n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z1W8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AJP74250.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
major facilitator superfamily transporter
SCNpilot_expt_500_bf_scaffold_1705_27
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

Not on your lists

comp(28739..29299)
DNA (561bp) protein (187aa)
Hexuronate transporter, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9TEK2_RICCO
Hexuronate transporter, putative
Hexuronate transporter, putative {ECO:0000313|EMBL:EEF25712.1}; Flags: Fragment;; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
SCNpilot_expt_500_bf_scaffold_1705_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29686..30807)
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI00036956FD
Uncharacterized protein {ECO:0000313|EMBL:AJP71200.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
AraC family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_1705_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30814..32247)
DNA (1434bp) protein (478aa)
6-aminohexanoate-cyclic-dimer hydrolase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RGK0_PHEZH rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP74251.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
6-aminohexanoate-cyclic-dimer hydrolase rbh
SCNpilot_expt_500_bf_scaffold_1705_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32450..33442
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IBU0_METNO rbh
EBNA-1 nuclear protein {ECO:0000313|EMBL:AJP71199.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein rbh
Displaying items 1-30 of 46 in total

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