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SCNpilot_expt_500_bf_scaffold_3719

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3719_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..224
DNA (222bp) protein (74aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
cysteinyl-tRNA synthetase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036A6603
SCNpilot_expt_500_bf_scaffold_3719_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

280..1215
DNA (936bp) protein (312aa)
dehydrogenase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCF49 rbh
Dehydrogenase {ECO:0000313|EMBL:AJP71515.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
dehydrogenase
SCNpilot_expt_500_bf_scaffold_3719_3
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1277..1612
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036E744B
ArsR family transcriptional regulator {ECO:0000313|EMBL:KKB11589.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ArsR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_3719_4
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1605..2060
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RDJ1_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG78381.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_500_bf_scaffold_3719_5
unknown

Not on your lists

2166..3122
DNA (957bp) protein (319aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3719_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3192..4784
DNA (1593bp) protein (531aa)
aroF; 3-deoxy-7-phosphoheptulonate synthase; K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] rbh
phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E3E61A rbh
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:AJP71513.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_3719_7
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4932..6710
DNA (1779bp) protein (593aa)
PAS sensor signal transduction histidine kinase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC4FE
signal transduction histidine kinase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_expt_500_bf_scaffold_3719_8
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6707..7591
DNA (885bp) protein (295aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
PAS/PAC sensor signal transduction histidine kinase; K14986 two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037883E5 rbh
SCNpilot_expt_500_bf_scaffold_3719_9
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7732..8121)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HXU9_9SPHN
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EZP72486.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_500_bf_scaffold_3719_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8140..8571)
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E4B8CD
Uncharacterized protein {ECO:0000313|EMBL:AJP71512.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3719_11
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8568..8768)
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD05C0
Uncharacterized protein {ECO:0000313|EMBL:GAO38774.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3719_12
unknown

Not on your lists

9232..10122
DNA (891bp) protein (297aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3719_13
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10428..10565
DNA (138bp) protein (46aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089752}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089759};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" sourc
tRNA (uracil-5-)-methyltransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B756AD
tRNA (uracil-5-)-methyltransferase Gid
SCNpilot_expt_500_bf_scaffold_3719_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10538..11032)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000361D728
Histidine kinase {ECO:0000313|EMBL:AJP71506.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
signal transduction protein
SCNpilot_expt_500_bf_scaffold_3719_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11061..11693)
DNA (633bp) protein (211aa)
hypothetical protein; K02291 phytoene synthase [EC:2.5.1.32]
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000307A1D2
Uncharacterized protein {ECO:0000313|EMBL:AJP71505.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_3719_16
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11799..13619
DNA (1821bp) protein (607aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E7A7 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO38624.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
Flp pilus assembly protein TadG
SCNpilot_expt_500_bf_scaffold_3719_17
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13616..14242
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E7A6
Uncharacterized protein {ECO:0000313|EMBL:EQB16271.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
tight adherence protein TadE
SCNpilot_expt_500_bf_scaffold_3719_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14239..14907
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E7A5
tight adherence protein TadE
Tight adherence protein TadE {ECO:0000313|EMBL:BAK67073.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_500_bf_scaffold_3719_19
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14982..16379)
DNA (1398bp) protein (466aa)
pyruvate dehydrogenase subunit beta (EC:1.2.4.1) rbh
Pyruvate dehydrogenase subunit beta {ECO:0000313|EMBL:AGH50339.1}; EC=1.2.4.1 {ECO:0000313|EMBL:AGH50339.1};; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
Pyruvate dehydrogenase subunit beta n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S744_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_3719_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16381..16521)
DNA (141bp) protein (47aa)
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
pdhA; Pyruvate dehydrogenase E1 component subunit alpha; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
pyruvate dehydrogenase E1 subunit alpha n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031FDDC3
SCNpilot_expt_500_bf_scaffold_3719_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17545..17892)
DNA (348bp) protein (116aa)
septum formation initiator n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E0074E
Septum formation initiator {ECO:0000313|EMBL:AJP71500.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_3719_22
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17998..18624)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6S9_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD26444.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_500_bf_scaffold_3719_23
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18706..19149)
DNA (444bp) protein (148aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WTR5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAM02019.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_expt_500_bf_scaffold_3719_24
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20111..20740
DNA (630bp) protein (210aa)
Probable phosphopyruvate hydratase n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FHW8_PELBH
Probable phosphopyruvate hydratase {ECO:0000313|EMBL:EAU43788.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
phosphopyruvate hydratase
SCNpilot_expt_500_bf_scaffold_3719_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20807..21244
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630AD4
Sphingomonas taxi strain 30a NODE_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28751.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3719_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21225..21566
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F75957
Uncharacterized protein {ECO:0000313|EMBL:AJP71498.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3719_27
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21563..21895
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630AD6
Uncharacterized protein {ECO:0000313|EMBL:AGH50333.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_500_bf_scaffold_3719_28
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21895..22206
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630AD7
Uncharacterized protein {ECO:0000313|EMBL:AJP74320.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_3719_29
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22266..22484
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DF2C3A
Sphingomonas taxi strain 30a NODE_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28754.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3719_30
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22504..23139)
DNA (636bp) protein (212aa)
protease n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DE154F
FIG056164: rhomboid family serine protease {ECO:0000313|EMBL:CCW19348.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
rhomboid-family protein
Displaying items 1-30 of 33 in total

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