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SCNpilot_expt_500_bf_scaffold_12293

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_12293_1
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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1..501
DNA (501bp) protein (167aa)
pyridoxal-5''''-phosphate-dependent protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225EB57
putative PLP-dependent enzyme possibly involved in cell wall biogenesis
Putative PLP-dependent enzyme possibly involved in cell wall biogenesis {ECO:0000313|EMBL:AEV24501.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_500_bf_scaffold_12293_2
Chlorobium ferrooxidans, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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498..962
DNA (465bp) protein (155aa)
GCN5 family acetyltransferase n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225EB58
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EAT59816.1}; TaxID=377431 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium ferrooxidans DSM 13031.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_12293_3
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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959..1855
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225EB59
hypothetical protein
Tax=RBG_16_Gammaproteobacteria_51_14_curated
SCNpilot_expt_500_bf_scaffold_12293_4
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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2007..3134
DNA (1128bp) protein (376aa)
LPS biosynthesis protein WbpG id=2965028 bin=GWF2_OP9_related_35_9 species=Pedobacter heparinus genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria) rbh
LPS biosynthesis protein WbpG rbh
Tax=RBG_16_Gammaproteobacteria_51_14_curated
SCNpilot_expt_500_bf_scaffold_12293_5
GWC2_Planctomycetes_49_10_curated, Physcisphaerae, Planctomycetes, Bacteria

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3131..3457
DNA (327bp) protein (109aa)
imidazole glycerol phosphate synthase subunit hisH; K02501 glutamine amidotransferase [EC:2.4.2.-]
Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit id=4176794 bin=GWC2_Ignavibacteria_56_12 species=unknown genus=Aeromonas taxon_order=Aeromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
Tax=GWC2_Planctomycetes_49_10_curated
SCNpilot_expt_500_bf_scaffold_12293_6
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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3396..3677
DNA (282bp) protein (94aa)
hisH; amidotransferase; K02501 glutamine amidotransferase [EC:2.4.2.-]
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Methanofollis liminatans DSM 4140 RepID=J0S109_9EURY
Tax=RBG_16_Gammaproteobacteria_51_14_curated
SCNpilot_expt_500_bf_scaffold_12293_7
GWC2_Planctomycetes_49_10_curated, Physcisphaerae, Planctomycetes, Bacteria

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3674..4444
DNA (771bp) protein (257aa)
histidine biosynthesis protein; K02500 cyclase [EC:4.1.3.-]
Histidine biosynthesis protein id=4361226 bin=GWF2_Lentisphaerae_52_8 species=Pedobacter heparinus genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
Tax=GWC2_Planctomycetes_49_10_curated
SCNpilot_expt_500_bf_scaffold_12293_8
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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4459..5667
DNA (1209bp) protein (403aa)
N-acetyl sugar amidotransferase n=1 Tax=Leptospira wolbachii serovar Codice str. CDC RepID=R9A7U9_9LEPT rbh
LPS biosynthesis protein rbh
Tax=RBG_16_Gammaproteobacteria_51_14_curated
SCNpilot_expt_500_bf_scaffold_12293_9
unknown

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comp(5639..6412)
DNA (774bp) protein (258aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_12293_10
unknown

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6441..7127
DNA (687bp) protein (229aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_12293_11
unknown

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7127..8428
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00038185B7
SCNpilot_expt_500_bf_scaffold_12293_12
unknown

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8540..9046
DNA (507bp) protein (169aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_12293_13
unknown

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9033..10253
DNA (1221bp) protein (407aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI000374D6B1
SCNpilot_expt_500_bf_scaffold_12293_14
Vibrio splendidus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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10375..11259
DNA (885bp) protein (295aa)
ilvE; putative branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00036F6752 rbh
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:EAP95061.1}; TaxID=314291 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio splendidus 12B01.;"
SCNpilot_expt_500_bf_scaffold_12293_15
Sphaerochaeta globosa, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

11302..11919
DNA (618bp) protein (206aa)
diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
Diaminopimelate decarboxylase {ECO:0000313|EMBL:ADY12202.1}; EC=4.1.1.20 {ECO:0000313|EMBL:ADY12202.1};; TaxID=158189 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy); (Spirochaeta sp. (strain Buddy)).;"
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003755E61
Displaying 15 items

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