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SCNpilot_expt_500_bf_scaffold_2264

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2264_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..686
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=uncultured organism RepID=T1W5R8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:AJP73223.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2264_2

Not on your lists

comp(756..2534)
DNA (1779bp) protein (593aa)
Uncharacterized protein n=1 Tax=uncultured organism RepID=T1W507_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:AGU10017.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2264_3

Not on your lists

comp(2544..4094)
DNA (1551bp) protein (517aa)
Uncharacterized protein n=1 Tax=uncultured organism RepID=T1W5J7_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:AGU10018.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2264_4
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4094..5578)
DNA (1485bp) protein (495aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EE446D rbh
Putative membrane protein {ECO:0000313|EMBL:EZP51743.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2264_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5854..7074)
DNA (1221bp) protein (407aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
argG; argininosuccinate synthase (EC:6.3.4.5); K01940 argininosuccinate synthase [EC:6.3.4.5] rbh
argininosuccinate synthase n=1 Tax=Sphingomonas elodea RepID=UPI0002630743 rbh
SCNpilot_expt_500_bf_scaffold_2264_6

Not on your lists

7189..7608
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=uncultured organism RepID=T1W7B6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:AGU10025.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2264_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7596..8858)
DNA (1263bp) protein (421aa)
Mycolic acid cyclopropane synthetase n=1 Tax=uncultured organism RepID=T1W5S7_9ZZZZ rbh
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:AJP73227.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
cyclopropane-fatty-acyl-phospholipid synthase rbh
SCNpilot_expt_500_bf_scaffold_2264_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8948..9685)
DNA (738bp) protein (246aa)
Oxidoreductase molybdopterin binding domain n=1 Tax=uncultured organism RepID=T1W514_9ZZZZ rbh
Molybdopterin-binding protein {ECO:0000313|EMBL:AJP73228.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative oxidoreductase; K07147 rbh
SCNpilot_expt_500_bf_scaffold_2264_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9682..10371)
DNA (690bp) protein (230aa)
Prokaryotic cytochrome b561 n=1 Tax=uncultured organism RepID=T1W5K3_9ZZZZ rbh
HupC {ECO:0000313|EMBL:AJP74611.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative cytochrome B561
SCNpilot_expt_500_bf_scaffold_2264_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10389..10604)
DNA (216bp) protein (72aa)
Sulfite exporter TauE/SafE n=1 Tax=uncultured organism RepID=T1W7C7_9ZZZZ
Membrane protein {ECO:0000313|EMBL:AJP73230.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative transmembrane protein; K07090
SCNpilot_expt_500_bf_scaffold_2264_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10604..11107)
DNA (504bp) protein (168aa)
Sulfite exporter TauE/SafE n=1 Tax=uncultured organism RepID=T1W7C7_9ZZZZ
Membrane protein {ECO:0000313|EMBL:AJP73230.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein; K07090
SCNpilot_expt_500_bf_scaffold_2264_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11104..12381)
DNA (1278bp) protein (426aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1
50S rRNA methyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI00026308E2
radical SAM protein
SCNpilot_expt_500_bf_scaffold_2264_13

Not on your lists

comp(12398..13333)
DNA (936bp) protein (312aa)
NADH(P)-binding n=1 Tax=uncultured organism RepID=T1W512_9ZZZZ rbh
NADH(P)-binding {ECO:0000313|EMBL:AGU10022.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2264_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13427..14305
DNA (879bp) protein (293aa)
LysR family transcriptional regulator n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC977 rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:AJP74612.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
LysR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2264_15
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14410..14811
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K2X8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB30919.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2264_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14973..15431)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDCA2
Uncharacterized protein {ECO:0000313|EMBL:AJP73234.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2264_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15428..16075)
DNA (648bp) protein (216aa)
phosphoglycerate/bisphosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
phosphoglycerate mutase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031D1B4B rbh
Phosphoglycerate mutase {ECO:0000313|EMBL:AJP73235.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_2264_18

Not on your lists

16385..16993
DNA (609bp) protein (203aa)
Outer membrane protein beta-barrel domain n=1 Tax=uncultured organism RepID=T1W5U3_9ZZZZ
Outer membrane protein beta-barrel domain {ECO:0000313|EMBL:AGU10046.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
putative outer membrane protein
SCNpilot_expt_500_bf_scaffold_2264_19

Not on your lists

17113..18243
DNA (1131bp) protein (377aa)
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] rbh
DNA polymerase III beta subunit, central domain n=1 Tax=uncultured organism RepID=T1W6B5_9ZZZZ rbh
DNA polymerase III beta subunit, central domain {ECO:0000313|EMBL:AGU10044.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
SCNpilot_expt_500_bf_scaffold_2264_20
unknown

Not on your lists

comp(18416..19054)
DNA (639bp) protein (213aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2264_21
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19047..19265)
DNA (219bp) protein (73aa)
DNA-binding protein n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B6AB4D
Cro/CI family transcriptional regulator; K07729 putative transcriptional regulator
Transcriptional regulator,Cro/CI family {ECO:0000313|EMBL:ACG79342.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_500_bf_scaffold_2264_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19422..20186
DNA (765bp) protein (255aa)
coenzyme q (ubiquinone) biosynthesis protein coq4 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D3BAB1 rbh
Ubiquinone biosynthesis protein {ECO:0000313|EMBL:AJP73238.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2264_23
unknown

Not on your lists

comp(20202..20951)
DNA (750bp) protein (250aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2264_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21025..22089
DNA (1065bp) protein (355aa)
DNA repair protein RecF n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EBE24A rbh
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
recF; recombination protein F rbh
SCNpilot_expt_500_bf_scaffold_2264_25
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22151..22672
DNA (522bp) protein (174aa)
TonB-like protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z3Z9_9SPHN
TonB-like protein {ECO:0000313|EMBL:EGD60677.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
TonB-like protein; K03832 periplasmic protein TonB
SCNpilot_expt_500_bf_scaffold_2264_26
Erythrobacter sp. NAP1, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22612..23214)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WH30_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EAQ28787.1}; TaxID=237727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. NAP1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2264_27

Not on your lists

23342..25204
DNA (1863bp) protein (621aa)
gyrB; DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3]
DNA gyrase B n=1 Tax=uncultured organism RepID=T1W522_9ZZZZ
DNA gyrase B {ECO:0000313|EMBL:AGU10037.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
SCNpilot_expt_500_bf_scaffold_2264_28
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25429..26793
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HF62_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQA98039.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
outer membrane efflux protein
SCNpilot_expt_500_bf_scaffold_2264_29
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26790..27812
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0G2Z1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQA98040.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
secretion protein HlyD family protein; K01993 HlyD family secretion protein
SCNpilot_expt_500_bf_scaffold_2264_30
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27818..28984
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GBL1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQA98041.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein rbh
Displaying items 1-30 of 35 in total

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