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SCNpilot_expt_500_bf_scaffold_2015

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2015_1
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..937)
DNA (936bp) protein (312aa)
Major facilitator superfamily MFS_1 n=1 Tax=uncultured bacterium RepID=K2EIL1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIL13310.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
major facilitator superfamily permease
SCNpilot_expt_500_bf_scaffold_2015_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1130..1807
DNA (678bp) protein (226aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Micavibrio aeruginosavorus EPB RepID=M4VIC6_9PROT
SCNpilot_expt_500_bf_scaffold_2015_3
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1841..2308
DNA (468bp) protein (156aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
pgk; phosphoglycerate kinase (EC:2.7.2.3)
phosphoglycerate kinase n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003736655
SCNpilot_expt_500_bf_scaffold_2015_4

Not on your lists

comp(2216..3298)
DNA (1083bp) protein (361aa)
Heme A synthase id=4771430 bin=GWC2_Alphaproteobacteria_42_16 species=Nitrosomonas sp. genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Cytochrome oxidase assembly {ECO:0000313|EMBL:EKE09506.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15
SCNpilot_expt_500_bf_scaffold_2015_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3310..3807)
DNA (498bp) protein (166aa)
Putative transcriptional regulator n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FN30_PHAMO
CarD family transcriptional regulator {ECO:0000313|EMBL:AIL13312.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
transcriptional regulator; K07736 CarD family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2015_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4014..4901)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PNI7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:AIL13313.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ABC transporter substrate-binding protein; K02077 zinc/manganese transport system substrate-binding protein
SCNpilot_expt_500_bf_scaffold_2015_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4898..5743)
DNA (846bp) protein (282aa)
ABC-3 protein n=1 Tax=uncultured bacterium RepID=K2EGV0_9BACT
Zinc ABC transporter permease {ECO:0000313|EMBL:AIL13314.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
putative ABC transporter, permease protein rbh
SCNpilot_expt_500_bf_scaffold_2015_8
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5736..6653)
DNA (918bp) protein (306aa)
ATPase component of Mn/Zn ABC-type transporter n=1 Tax=Herbaspirillum sp. CF444 RepID=J3D3Y7_9BURK
ATPase component of Mn/Zn ABC-type transporter {ECO:0000313|EMBL:EJL84219.1}; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
znuC; cation ABC transporter ATP-binding protein; K02074 zinc/manganese transport system ATP-binding protein
SCNpilot_expt_500_bf_scaffold_2015_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6747..7451
DNA (705bp) protein (235aa)
Cell division transport system ATP-binding protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P5A5_AZOS1
Uncharacterized protein {ECO:0000313|EMBL:AIL13315.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
ftsE; cell division transport system ATP-binding protein; K09812 cell division transport system ATP-binding protein
SCNpilot_expt_500_bf_scaffold_2015_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7444..8340
DNA (897bp) protein (299aa)
Cell division protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JNI4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL13316.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
cell division protein; K09811 cell division transport system permease protein
SCNpilot_expt_500_bf_scaffold_2015_11
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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8341..8928
DNA (588bp) protein (196aa)
D,D-heptose 1,7-bisphosphate phosphatase {ECO:0000256|PIRNR:PIRNR004682}; EC=3.1.3.- {ECO:0000256|PIRNR:PIRNR004682};; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
Histidinol-phosphatase (EC:3.1.3.15); K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00037A5F92
SCNpilot_expt_500_bf_scaffold_2015_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8944..9555
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9S6S3_PHAFV
Uncharacterized protein {ECO:0000313|EMBL:AIL13317.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
conserved exported protein of unknown function
SCNpilot_expt_500_bf_scaffold_2015_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9552..10280
DNA (729bp) protein (243aa)
phospholipid/glycerol acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003626B3A
Uncharacterized protein {ECO:0000313|EMBL:AIL13318.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_2015_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10277..11392
DNA (1116bp) protein (372aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TY44_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL13319.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2015_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11442..11969)
DNA (528bp) protein (176aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13320.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_2015_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12106..12846)
DNA (741bp) protein (247aa)
ubiquinone biosynthesis O-methyltransferase (EC:2.1.1.64); K00568 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
Ubiquinone biosynthesis O-methyltransferase n=1 Tax=uncultured Rhodospirillales bacterium HF0070_31K06 RepID=E0XSP6_9PROT
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_2015_17
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12949..14184
DNA (1236bp) protein (412aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Aspartokinase (EC:2.7.2.4)
aspartate kinase n=1 Tax=Thalassospira lucentensis RepID=UPI0003B6E624
SCNpilot_expt_500_bf_scaffold_2015_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14313..15086
DNA (774bp) protein (258aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13324.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_2015_19
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15259..16434
DNA (1176bp) protein (392aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL13325.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_bf_scaffold_2015_20
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16431..17402)
DNA (972bp) protein (324aa)
Diguanylate cyclase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UHB8_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:AIL13326.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_expt_500_bf_scaffold_2015_21
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17589..18308)
DNA (720bp) protein (240aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rph; ribonuclease PH (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56] rbh
Ribonuclease PH n=1 Tax=alpha proteobacterium BAL199 RepID=A8U071_9PROT rbh
SCNpilot_expt_500_bf_scaffold_2015_22
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18387..19421
DNA (1035bp) protein (345aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Oceanibaculum indicum P24 RepID=K2KLR9_9PROT rbh
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hrcA; heat-inducible transcription repressor; K03705 heat-inducible transcriptional repressor rbh
SCNpilot_expt_500_bf_scaffold_2015_23
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19433..20032
DNA (600bp) protein (200aa)
Protein GrpE n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IVK0_RHOCS
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
grpE; co-chaperone GrpE; K03687 molecular chaperone GrpE
SCNpilot_expt_500_bf_scaffold_2015_24
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20169..21530)
DNA (1362bp) protein (454aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Dihydrolipoyl dehydrogenase n=1 Tax=uncultured bacterium RepID=K2DVU5_9BACT
dihydrolipoyl dehydrogenase 1, mitochondrial-like
SCNpilot_expt_500_bf_scaffold_2015_25
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21533..22783)
DNA (1251bp) protein (417aa)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61;; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC:2.3.1.61)
dihydrolipoamide succinyltransferase n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225A8B9
SCNpilot_expt_500_bf_scaffold_2015_26
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22908..25580)
DNA (2673bp) protein (891aa)
2-oxoglutarate dehydrogenase {ECO:0000313|EMBL:AIL13332.1}; EC=1.2.4.2 {ECO:0000313|EMBL:AIL13332.1};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
sucA; 2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2); K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
2-oxoglutarate dehydrogenase E1 component n=1 Tax=Oceanibaculum indicum P24 RepID=K2JUW5_9PROT
SCNpilot_expt_500_bf_scaffold_2015_27
unknown

Not on your lists

26601..26957
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2015_28
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27057..27941)
DNA (885bp) protein (295aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
succinyl-CoA synthetase subunit alpha; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] rbh
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Oceanibaculum indicum P24 RepID=K2JS91_9PROT rbh
SCNpilot_expt_500_bf_scaffold_2015_29
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27943..29112)
DNA (1170bp) protein (390aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
sucC1; succinyl-CoA synthetase subunit beta; K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
malate--CoA ligase subunit beta n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B358EA
SCNpilot_expt_500_bf_scaffold_2015_30
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29113..30057)
DNA (945bp) protein (315aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
malate dehydrogenase, NAD-dependent; K00024 malate dehydrogenase [EC:1.1.1.37] rbh
Malate dehydrogenase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RSB0_ACCPU rbh
Displaying items 1-30 of 32 in total

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