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SCNpilot_expt_500_bf_scaffold_5113

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5113_1
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1140)
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDBCF
Putative membrane protein {ECO:0000313|EMBL:EZP54669.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5113_2
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1199..2599)
DNA (1401bp) protein (467aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692, ECO:0000313|EMBL:AJR25662.1};; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
pdhD; dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] rbh
Dihydrolipoyl dehydrogenase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0I9L7_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_5113_3
unknown

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comp(2599..2808)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000381D9E4
SCNpilot_expt_500_bf_scaffold_5113_4
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2810..3469)
DNA (660bp) protein (220aa)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
pdhC; pyruvate dehydrogenase E2 component (EC:2.3.1.12); K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037765AB
SCNpilot_expt_500_bf_scaffold_5113_5
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3442..4005)
DNA (564bp) protein (188aa)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
Pyruvate dehydrogenase E2 component n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S361_9SPHN
pyruvate dehydrogenase E2 component
SCNpilot_expt_500_bf_scaffold_5113_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4112..4564
DNA (453bp) protein (151aa)
universal stress protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003692372
Universal stress protein {ECO:0000313|EMBL:AIT08136.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
UspA domain-containing protein
SCNpilot_expt_500_bf_scaffold_5113_7
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4640..5845
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035C6CCC rbh
Peptidase M28 {ECO:0000313|EMBL:KHA64333.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
peptidase M28
SCNpilot_expt_500_bf_scaffold_5113_8
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5852..6415)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CAC63
Uncharacterized protein {ECO:0000313|EMBL:GAL99800.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5113_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6577..6954)
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000381F83F
Sphingomonas taxi strain 30a NODE_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28000.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
GAF domain-containing protein; K07170 GAF domain-containing protein
SCNpilot_expt_500_bf_scaffold_5113_10
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7378..8037)
DNA (660bp) protein (220aa)
Pseudouridine synthase {ECO:0000313|EMBL:EZP54652.1}; EC=5.4.99.- {ECO:0000313|EMBL:EZP54652.1};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
pseudouridine synthase; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036140D4 rbh
SCNpilot_expt_500_bf_scaffold_5113_11
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8083..8856
DNA (774bp) protein (258aa)
hypothetical protein n=2 Tax=Sphingomonas melonis RepID=UPI00037466FA
D-alanyl-D-alanine carboxypeptidase family protein {ECO:0000313|EMBL:EZP54651.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
D-alanyl-D-alanine carboxypeptidase
SCNpilot_expt_500_bf_scaffold_5113_12
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8841..9137)
DNA (297bp) protein (99aa)
Extradiol ring-cleavage dioxygenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W649_9SPHN
Extradiol ring-cleavage dioxygenase III subunit B {ECO:0000313|EMBL:KGB54939.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
extradiol ring-cleavage dioxygenase
SCNpilot_expt_500_bf_scaffold_5113_13
unknown

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comp(9134..9712)
DNA (579bp) protein (193aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_5113_14
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9734..10336)
DNA (603bp) protein (201aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
NAD(P)H quinone oxidoreductase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB08C rbh
wrbA; TrpR binding protein WrbA; K03809 Trp repressor binding protein
SCNpilot_expt_500_bf_scaffold_5113_15
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10404..11129)
DNA (726bp) protein (242aa)
pirin n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036339AC rbh
Putative pirin-related protein {ECO:0000313|EMBL:GAM00273.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
pirin-related protein; K06911 rbh
SCNpilot_expt_500_bf_scaffold_5113_16
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11226..12113
DNA (888bp) protein (296aa)
LysR family transcriptional regulator n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036F1540 rbh
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:GAM00272.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_5113_17
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12122..12715
DNA (594bp) protein (198aa)
phosphoesterase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B7B910
PAP2 superfamily protein {ECO:0000313|EMBL:EZP49903.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
PA-phosphatase-like phosphoesterase
Displaying 17 items

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