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SCNpilot_expt_500_bf_scaffold_5237

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_5237_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..308)
DNA (306bp) protein (102aa)
mammalian cell entry protein n=1 Tax=Sphingomonas melonis RepID=UPI000370E4B3
Sphingomonas taxi strain 30a NODE_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26224.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
mammalian cell entry domain-containing protein
SCNpilot_expt_500_bf_scaffold_5237_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(308..1126)
DNA (819bp) protein (273aa)
iron ABC transporter ATP-binding protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000360BD6C rbh
Sphingomonas taxi strain 30a NODE_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26246.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
ABC transporter-like protein; K02065 putative ABC transport system ATP-binding protein rbh
SCNpilot_expt_500_bf_scaffold_5237_3
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1126..2223)
DNA (1098bp) protein (366aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000378B866 rbh
ABC transporter permease {ECO:0000313|EMBL:KHA64898.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_5237_4
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2279..3544)
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036A31B2 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE56845.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5237_5
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3624..5519)
DNA (1896bp) protein (632aa)
acriflavin resistance protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4F5AE
AcrB/AcrD/AcrF family protein {ECO:0000313|EMBL:EZP55840.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
acrB; hydrophobic/amphiphilic exporter-1
SCNpilot_expt_500_bf_scaffold_5237_6
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5567..5854
DNA (288bp) protein (96aa)
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_500_bf_scaffold_5237_7
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

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5866..7005
DNA (1140bp) protein (380aa)
Uncharacterized protein {ECO:0000313|EMBL:KIY10618.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
SCNpilot_expt_500_bf_scaffold_5237_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6825..7997)
DNA (1173bp) protein (391aa)
secretion protein HylD n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5F0BB rbh
DNA, contig: SP601 {ECO:0000313|EMBL:GAN11946.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hlyD; HlyD-family secretion protein rbh
SCNpilot_expt_500_bf_scaffold_5237_9
unknown

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comp(8130..8468)
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_5237_10
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8915..9172)
DNA (258bp) protein (86aa)
Transglycosylase associated family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZE8_9SPHN
DNA, contig: SP601 {ECO:0000313|EMBL:GAN11944.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5237_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9399..9698)
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA753
Uncharacterized protein {ECO:0000313|EMBL:AJP73325.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_5237_12
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9807..10037)
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZF0_9SPHN
DNA, contig: SP601 {ECO:0000313|EMBL:GAN11942.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_expt_500_bf_scaffold_5237_13
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10186..10884
DNA (699bp) protein (233aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.8.1.-)
thiouridylase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC8FD
Displaying 13 items

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