ggKbase home page

SCNpilot_expt_500_bf_scaffold_3958

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3958_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1224
DNA (1224bp) protein (408aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
argininosuccinate synthase (EC:6.3.4.5); K01940 argininosuccinate synthase [EC:6.3.4.5]
argininosuccinate synthase n=1 Tax=Sphingomonas melonis RepID=UPI0003621903
SCNpilot_expt_500_bf_scaffold_3958_2
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1324..3006
DNA (1683bp) protein (561aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037EFADD rbh
Putative membrane protein {ECO:0000313|EMBL:EZP51742.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_3958_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2993..4102)
DNA (1110bp) protein (370aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036C7424 rbh
Sphingomonas taxi strain 30a NODE_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28313.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein; K09919 hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_3958_4
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4216..4686)
DNA (471bp) protein (157aa)
endoribonuclease n=1 Tax=Sphingomonas melonis RepID=UPI00036815A3
Endoribonuclease {ECO:0000313|EMBL:KHA63867.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
endoribonuclease L-PSP
SCNpilot_expt_500_bf_scaffold_3958_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4720..5349)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3E792 rbh
Uncharacterized protein {ECO:0000313|EMBL:AIT06325.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3958_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5346..5618)
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003813492
Sphingomonas taxi strain 30a NODE_22, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27344.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3958_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5653..6015
DNA (363bp) protein (121aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas melonis RepID=UPI000374468F
Sphingomonas taxi strain 30a NODE_22, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27345.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
response regulator receiver protein
SCNpilot_expt_500_bf_scaffold_3958_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6103..6270)
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=1 Tax=Sphingomonas sp. S17 RepID=F3X388_9SPHN
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
50S ribosomal protein L33; K02913 large subunit ribosomal protein L33
SCNpilot_expt_500_bf_scaffold_3958_9
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6434..6715
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003734D7F
Uncharacterized protein {ECO:0000313|EMBL:KHA63873.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_expt_500_bf_scaffold_3958_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6715..7269
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036BF1A1
Sphingomonas taxi strain 30a NODE_22, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27373.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3958_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7338..7835
DNA (498bp) protein (166aa)
DNA-binding protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631AC0
DNA-binding protein {ECO:0000313|EMBL:AJP70834.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ferritin Dps family protein; K04047 starvation-inducible DNA-binding protein
SCNpilot_expt_500_bf_scaffold_3958_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7889..8398)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E927EE
nuclear export factor GLE1
Nuclear export factor GLE1 {ECO:0000313|EMBL:ABD87976.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_500_bf_scaffold_3958_13
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8413..10443)
DNA (2031bp) protein (677aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031D28A0 rbh
TonB-dependent receptor {ECO:0000313|EMBL:EKY30205.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_500_bf_scaffold_3958_14
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10972..15573)
DNA (4602bp) protein (1534aa)
NAD-specific glutamate dehydrogenase (EC:1.4.1.2); K15371 glutamate dehydrogenase [EC:1.4.1.2] rbh
glutamate dehydrogenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B32230 rbh
DNA, contig: SP642 {ECO:0000313|EMBL:GAN14500.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_expt_500_bf_scaffold_3958_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15869..17101)
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CC613
Uncharacterized protein {ECO:0000313|EMBL:AJP70754.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein rbh
Displaying 15 items

View Taxonomy