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SCNpilot_expt_500_bf_scaffold_4116

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4116_1
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..125
DNA (123bp) protein (41aa)
Acetaldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042164}; EC=1.2.1.10 {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042125};; Acetaldehyde dehydrogenase [acetylating] {ECO:0000256|HAMAP-Rule:MF_01657}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
acetaldehyde dehydrogenase; K04073 acetaldehyde dehydrogenase [EC:1.2.1.10]
acetaldehyde dehydrogenase n=1 Tax=Streptomyces RepID=UPI00037AF9D4
SCNpilot_expt_500_bf_scaffold_4116_2
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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122..1153
DNA (1032bp) protein (344aa)
4-hydroxy-2-oxovalerate aldolase {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546}; Short=HOA {ECO:0000256|HAMAP-Rule:MF_01656};; EC=4.1.3.39 {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546};; 4-hydroxy-2-keto-pentanoic acid aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; 4-hydroxy-2-oxopentanoate aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium
4-hydroxy-2-ketovalerate aldolase; K01666 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] rbh
4-hydroxy-2-oxovalerate aldolase n=1 Tax=Sphingobium baderi LL03 RepID=T0HBL3_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_4116_3
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1150..2727
DNA (1578bp) protein (526aa)
monooxygenase n=1 Tax=Burkholderia sp. JPY251 RepID=UPI00036ECE56 rbh
Monooxygenase {ECO:0000313|EMBL:KGB81486.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
monooxygenase rbh
SCNpilot_expt_500_bf_scaffold_4116_4
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2740..3576
DNA (837bp) protein (279aa)
putative FAA hydrolase (EC:3.7.1.2) rbh
5-carboxymethyl-2-hydroxymuconate isomerase n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GSY6_9SPHN rbh
5-carboxymethyl-2-hydroxymuconate isomerase {ECO:0000313|EMBL:EPR15186.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
SCNpilot_expt_500_bf_scaffold_4116_5
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3643..4578)
DNA (936bp) protein (312aa)
Transcriptional regulator LysR family n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K150_AGRVS
LysR family transcriptional regulator
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
SCNpilot_expt_500_bf_scaffold_4116_6
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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4686..5438
DNA (753bp) protein (251aa)
dehydrogenase/reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Uncharacterized protein n=1 Tax=Frankia sp. QA3 RepID=I8QUP3_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KJE21251.1}; TaxID=1502723 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
SCNpilot_expt_500_bf_scaffold_4116_7
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5455..6336
DNA (882bp) protein (294aa)
2,3-dihydroxybiphenyl-1,2-dioxygenase; K00462 biphenyl-2,3-diol 1,2-dioxygenase [EC:1.13.11.39] rbh
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MQ67_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:CCW17782.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
SCNpilot_expt_500_bf_scaffold_4116_8
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6349..7182
DNA (834bp) protein (278aa)
alpha/beta hydrolase fold protein; K05714 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase [EC:3.7.1.-]
Alpha/beta hydrolase fold n=1 Tax=Burkholderia sp. H160 RepID=B5WJK6_9BURK
Alpha/beta hydrolase fold {ECO:0000313|EMBL:EEA01482.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
SCNpilot_expt_500_bf_scaffold_4116_9
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7817..8674
DNA (858bp) protein (286aa)
aldehyde reductase/2,5-didehydrogluconate reductase (EC:1.1.1.274) rbh
Aldo/keto reductase, diketogulonate reductase n=1 Tax=Novosphingobium sp. AP12 RepID=J2H500_9SPHN rbh
2,5-diketo-D-gluconic acid reductase {ECO:0000313|EMBL:KJR62230.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
SCNpilot_expt_500_bf_scaffold_4116_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8839..9636)
DNA (798bp) protein (266aa)
Acid phosphatase {ECO:0000256|PIRNR:PIRNR000897}; EC=3.1.3.2 {ECO:0000256|PIRNR:PIRNR000897};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
PA-phosphatase-like phosphoesterase; K09474 acid phosphatase (class A) [EC:3.1.3.2]
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000363C99D
SCNpilot_expt_500_bf_scaffold_4116_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9745..10494)
DNA (750bp) protein (250aa)
TonB-dependent receptor, plug n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IEI6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJP74428.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
TonB-dependent receptor, plug
SCNpilot_expt_500_bf_scaffold_4116_12
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10523..11716)
DNA (1194bp) protein (398aa)
TonB-dependent receptor, plug n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IEI6_9SPHN
TonB-dependent receptor, plug
TonB-dependent receptor, plug {ECO:0000313|EMBL:CCA90711.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_500_bf_scaffold_4116_13
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11873..12085
DNA (213bp) protein (71aa)
arylsulfatase; K01130 arylsulfatase [EC:3.1.6.1]
UPI0003D0334C related cluster n=1 Tax=unknown RepID=UPI0003D0334C
Sulfatase {ECO:0000313|EMBL:ESZ88105.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
Displaying 13 items

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