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SCNpilot_expt_500_bf_scaffold_2544

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2544_1
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..874
DNA (873bp) protein (291aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Sphingobium sp. AP49 RepID=J2WPL0_9SPHN
N-acetylglucosamine-6-phosphate deacetylase
SCNpilot_expt_500_bf_scaffold_2544_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

943..1920
DNA (978bp) protein (326aa)
polysaccharide deacetylase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA10E
Polysaccharide deacetylase {ECO:0000313|EMBL:GAO55088.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
pgdA; polysaccharide deacetylase
SCNpilot_expt_500_bf_scaffold_2544_3
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2012..2527
DNA (516bp) protein (172aa)
Transcriptional regulator, MarR family n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GS02_SPHAL
MarR family transcriptional regulator
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_expt_500_bf_scaffold_2544_4
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2581..3159
DNA (579bp) protein (193aa)
NADPH-dependent FMN reductase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPV5_9SPHN
NADPH-dependent FMN reductase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_2544_5
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3221..4399
DNA (1179bp) protein (393aa)
succinyl-CoA:(R)-citramalate CoA-transferase (EC:2.8.3.-); K07749 formyl-CoA transferase [EC:2.8.3.16] rbh
Succinyl-CoA:(R)-citramalate CoA-transferase {ECO:0000313|EMBL:ABD24623.1}; EC=2.8.3.- {ECO:0000313|EMBL:ABD24623.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Succinyl-CoA:(R)-citramalate CoA-transferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC00_NOVAD rbh
SCNpilot_expt_500_bf_scaffold_2544_6
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4396..5799
DNA (1404bp) protein (468aa)
leuC; isopropylmalate isomerase large subunit; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase large subunit n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAA0_9SPHN
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_2544_7
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6309..6731)
DNA (423bp) protein (141aa)
MarR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPK4_9SPHN
MarR family transcriptional regulator {ECO:0000313|EMBL:KGB58649.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
MarR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2544_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6843..7745
DNA (903bp) protein (301aa)
hydroxymethylglutaryl-CoA lyase (EC:4.1.3.4); K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
Hydroxymethylglutaryl-CoA lyase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UX19_9SPHN
Hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:ENY83000.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_2544_9
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7813..8940
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYQ1_9SPHN
Alpha/beta hydrolase {ECO:0000313|EMBL:KGB58651.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_2544_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8919..9956
DNA (1038bp) protein (346aa)
Aminoglycoside phosphotransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9J2_9SPHN
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:ENY80383.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
aminoglycoside phosphotransferase
SCNpilot_expt_500_bf_scaffold_2544_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9956..11254
DNA (1299bp) protein (433aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phosphopyruvate hydratase; K01689 enolase [EC:4.2.1.11]
Enolase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPW1_9SPHN
SCNpilot_expt_500_bf_scaffold_2544_12
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11254..12165
DNA (912bp) protein (304aa)
D-3-phosphoglycerate dehydrogenase SerA3 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPK9_9SPHN
serA3; D-3-phosphoglycerate dehydrogenase SerA3
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_500_bf_scaffold_2544_13
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12165..12869
DNA (705bp) protein (235aa)
Alpha/beta hydrolase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAA8_9SPHN
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:AJA08139.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
alpha/beta hydrolase
SCNpilot_expt_500_bf_scaffold_2544_14
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12854..13348)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPW4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KGB53229.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2544_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13442..14623
DNA (1182bp) protein (394aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPL3_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:ENY80390.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_2544_16
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14620..15684
DNA (1065bp) protein (355aa)
TonB-dependent receptor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPL3_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:KGB53228.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
TonB-dependent receptor
SCNpilot_expt_500_bf_scaffold_2544_17
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15917..16255
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAB7_9SPHN
hypothetical protein
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_expt_500_bf_scaffold_2544_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16268..16909
DNA (642bp) protein (214aa)
Transposase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYR4_9SPHN
Alkylhydroperoxidase ahpD core domain {ECO:0000313|EMBL:GAO55034.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
transposase rbh
SCNpilot_expt_500_bf_scaffold_2544_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17094..17645
DNA (552bp) protein (184aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPM3_9SPHN
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ENY80400.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_500_bf_scaffold_2544_20
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17750..18799
DNA (1050bp) protein (350aa)
vitamin-B12 independent methionine synthase; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
Vitamin-B12 independent methionine synthase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYQ6_9SPHN
Vitamin-B12 independent methionine synthase {ECO:0000313|EMBL:KGB58656.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
SCNpilot_expt_500_bf_scaffold_2544_21
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18877..19362
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Pseudomonas thermotolerans RepID=UPI00037EC8E9
Uncharacterized protein {ECO:0000313|EMBL:ETX04852.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
sulfatase
SCNpilot_expt_500_bf_scaffold_2544_22
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19377..20525
DNA (1149bp) protein (383aa)
Sulfatase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPV1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ETW96267.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
sulfatase
SCNpilot_expt_500_bf_scaffold_2544_23
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20604..22850)
DNA (2247bp) protein (749aa)
Putative TonB-dependent receptor n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y462_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:KGB55567.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
outer membrane receptor (OMR) family protein rbh
SCNpilot_expt_500_bf_scaffold_2544_24
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22972..24192)
DNA (1221bp) protein (407aa)
oxidoreductase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CAC26 rbh
acyl-CoA dehydrogenase domain-containing protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
Displaying 24 items

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