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SCNpilot_expt_500_bf_scaffold_2381

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2381_1
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1069)
DNA (1068bp) protein (356aa)
Putative amino acid uptake ABC transporter permease protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V6C4_9RHIZ rbh
Putative amino acid uptake ABC transporter permease protein {ECO:0000313|EMBL:ENN88706.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
ABC-type amino acid transport system, permease component rbh
SCNpilot_expt_500_bf_scaffold_2381_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1136..1882)
DNA (747bp) protein (249aa)
Putative amino acid uptake ABC transporter periplasmic solute-binding protein protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V4A5_9RHIZ rbh
Putative amino acid uptake ABC transporter periplasmic solute-binding protein protein {ECO:0000313|EMBL:ENN88705.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
ABC transporter substrate-binding protein rbh
SCNpilot_expt_500_bf_scaffold_2381_3
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2159..3193)
DNA (1035bp) protein (345aa)
Putative transcriptional regulator, LacI family protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U813_9RHIZ rbh
Putative transcriptional regulator, LacI family protein {ECO:0000313|EMBL:ENN88704.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
LacI family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_2381_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3207..4862)
DNA (1656bp) protein (552aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXU6_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR83191.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative glycogen debranching enzyme rbh
SCNpilot_expt_500_bf_scaffold_2381_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4865..5677)
DNA (813bp) protein (271aa)
ABC-type sugar transport system, permease component n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IR97_RHIML rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:KDP70575.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
putative sugar ABC transporter; K02026 multiple sugar transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_2381_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5670..6617)
DNA (948bp) protein (316aa)
ABC-type transporter, integral membrane subunit n=7 Tax=Rhizobium meliloti RepID=F6C3P1_SINMB rbh
ABC-type sugar transport system permease component {ECO:0000313|EMBL:EYR83193.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative sugar uptake ABC transporter permease; K02025 multiple sugar transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_2381_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6638..7843)
DNA (1206bp) protein (402aa)
Family 1 extracellular solute-binding protein n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FYR0_RHIML rbh
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDP70573.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein rbh
SCNpilot_expt_500_bf_scaffold_2381_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7877..9022)
DNA (1146bp) protein (382aa)
Maltose/maltodextrin import ATP-binding protein MalK {ECO:0000313|EMBL:EYR83195.1}; EC=3.6.3.19 {ECO:0000313|EMBL:EYR83195.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
malK3; Maltose/maltodextrin import ATP-binding protein MalK (EC:3.6.3.19) rbh
Maltose/maltodextrin import ATP-binding protein MalK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EKS5_9RHIZ rbh
SCNpilot_expt_500_bf_scaffold_2381_9
Agrobacterium fabrum, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9241..10320
DNA (1080bp) protein (360aa)
Transcriptional regulator, MerR family n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q8U4W9_AGRT5 rbh
MerR family transcriptional regulator rbh
Transcriptional regulator, MerR family {ECO:0000313|EMBL:AAK89742.2}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
SCNpilot_expt_500_bf_scaffold_2381_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10380..11714)
DNA (1335bp) protein (445aa)
beta alanine--pyruvate transaminase; K00822 beta-alanine--pyruvate transaminase [EC:2.6.1.18] rbh
omega amino acid--pyruvate aminotransferase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037D90C1 rbh
Aminotransferase class-III {ECO:0000313|EMBL:ACI58072.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_500_bf_scaffold_2381_11
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11858..12406
DNA (549bp) protein (183aa)
Aldehyde dehydrogenase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V6C0_9RHIZ rbh
Aldehyde dehydrogenase protein {ECO:0000313|EMBL:ENN88701.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
puuR; HTH-type transcriptional regulator PuuR rbh
SCNpilot_expt_500_bf_scaffold_2381_12
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12419..13219)
DNA (801bp) protein (267aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197};; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] rbh
Diaminopimelate epimerase n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DQJ7_9RHIZ rbh
SCNpilot_expt_500_bf_scaffold_2381_13
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13293..14612)
DNA (1320bp) protein (440aa)
Monooxygenase n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KCH8_9RHIZ rbh
Monooxygenase {ECO:0000313|EMBL:EMG52539.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
monooxygenase rbh
SCNpilot_expt_500_bf_scaffold_2381_14
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14632..15636)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K4V9_AGRVS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACM39907.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_500_bf_scaffold_2381_15
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15706..16296)
DNA (591bp) protein (197aa)
Acetyltransferase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K4V7_AGRVS rbh
acetyltransferase rbh
Acetyltransferase {ECO:0000313|EMBL:ACM39905.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_500_bf_scaffold_2381_16
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16853..17305
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D7CD23
GNAT family acetyltransferase {ECO:0000313|EMBL:KHQ53099.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2381_17
unknown

Not on your lists

17463..17603
DNA (141bp) protein (47aa)

This feature has no annotations

Displaying 17 items

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