ggKbase home page

SCNpilot_expt_500_bf_scaffold_3973

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3973_1
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1249
DNA (1248bp) protein (416aa)
Xylose ABC transporter, permease protein XylH n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDF7_PELHB rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:KFL30820.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
xylose ABC transporter permease XylH; K10544 D-xylose transport system permease protein rbh
SCNpilot_expt_500_bf_scaffold_3973_2
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1261..2043
DNA (783bp) protein (261aa)
D-xylose transport ATP-binding protein XylG; K10545 D-xylose transport system ATP-binding protein [EC:3.6.3.17]
D-xylose transport ATP-binding protein XylG n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDF6_PELHB
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB09263.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_3973_3
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2093..2752
DNA (660bp) protein (220aa)
UPI0003CF382E related cluster n=1 Tax=unknown RepID=UPI0003CF382E
Uncharacterized protein {ECO:0000313|EMBL:KFL28658.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3973_4
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2813..3940
DNA (1128bp) protein (376aa)
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
S-(hydroxymethyl)glutathione dehydrogenase; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
S-(Hydroxymethyl)glutathione dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDF5_PELHB
SCNpilot_expt_500_bf_scaffold_3973_5
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4133..4627
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4RAR5_9CAUL
UPF0178 protein FF80_03283 {ECO:0000256|HAMAP-Rule:MF_00489}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein; K09768 hypothetical protein
SCNpilot_expt_500_bf_scaffold_3973_6
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4696..5577
DNA (882bp) protein (294aa)
Polysaccharide deacetylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCU9_PELHB
Polysaccharide deacetylase {ECO:0000313|EMBL:KFC62717.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
polysaccharide deacetylase
SCNpilot_expt_500_bf_scaffold_3973_7
unknown

Not on your lists

comp(5591..5818)
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3973_8
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6190..6405
DNA (216bp) protein (72aa)
Cold shock protein CspA n=1 Tax=Loktanella cinnabarina LL-001 RepID=U2Z994_9RHOB
Cold-shock protein {ECO:0000313|EMBL:KKB08592.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
cold shock family protein; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_expt_500_bf_scaffold_3973_9
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6487..6930)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZ57_BREDI
Uncharacterized protein {ECO:0000313|EMBL:KKB83335.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
SCNpilot_expt_500_bf_scaffold_3973_10
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7492..8247
DNA (756bp) protein (252aa)
rRNA methylase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] rbh
rRNA methylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCU8_PELHB rbh
RNA methyltransferase {ECO:0000313|EMBL:KKB80835.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_500_bf_scaffold_3973_11
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8244..8639
DNA (396bp) protein (132aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB09789.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_3973_12
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8720..9736)
DNA (1017bp) protein (339aa)
Glycosyltransferase n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q2J9_9DELT
Glycosyltransferase {ECO:0000313|EMBL:EIG54005.1}; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3973_13
Spiribacter salinus, Spiribacter, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9773..9991)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Spiribacter salinus M19-40 RepID=R4VHE8_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGM41606.1}; TaxID=1260251 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Spiribacter.;" source="Spiribacter salinus M19-40.;"
SCNpilot_expt_500_bf_scaffold_3973_14
unknown

Not on your lists

10386..10565
DNA (180bp) protein (60aa)

This feature has no annotations

Displaying 14 items

View Taxonomy