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SCNpilot_expt_500_bf_scaffold_2222

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2222_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..557)
DNA (555bp) protein (185aa)
potassium transporter Kup n=1 Tax=Rhizobium leguminosarum RepID=UPI000380ACCC
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
K potassium transporter; K03549 KUP system potassium uptake protein
SCNpilot_expt_500_bf_scaffold_2222_2
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(706..1296)
DNA (591bp) protein (197aa)
NADPH-dependent FMN reductase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HT00_9RHIZ
FMN reductase {ECO:0000313|EMBL:KFL28952.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative reductase
SCNpilot_expt_500_bf_scaffold_2222_3
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1475..1924)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. AU12-08 RepID=S9S5W8_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EPY00029.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2222_4
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1996..2352
DNA (357bp) protein (119aa)
Transcriptional regulator, MerR family n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QDK5_ACIAP
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ADX47565.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_500_bf_scaffold_2222_5
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2349..3089)
DNA (741bp) protein (247aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
pyridoxine 5'-phosphate synthase; K03474 pyridoxine 5-phosphate synthase [EC:2.6.99.2] rbh
Pyridoxine 5'-phosphate synthase n=1 Tax=uncultured bacterium RepID=E4WME8_9BACT rbh
SCNpilot_expt_500_bf_scaffold_2222_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3182..3736)
DNA (555bp) protein (185aa)
acetolactate synthase small subunit; K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6]
Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=E4WME9_9BACT rbh
Acetolactate synthase {ECO:0000313|EMBL:KKB10394.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_2222_7
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3760..5529)
DNA (1770bp) protein (590aa)
acetolactate synthase large subunit; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] rbh
Acetolactate synthase large subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REX5_PELHB rbh
Acetolactate synthase {ECO:0000313|EMBL:KKB09967.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_2222_8
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5942..7441
DNA (1500bp) protein (500aa)
Putative low-affinity inorganic phosphate transporter n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R811_PELHB rbh
Inorganic phosphate transporter {ECO:0000313|EMBL:KKB09968.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
putative low-affinity inorganic phosphate transporter; K03306 inorganic phosphate transporter, PiT family rbh
SCNpilot_expt_500_bf_scaffold_2222_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7438..7899)
DNA (462bp) protein (154aa)
NUDIX hydrolase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4REJ7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB09969.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
NUDIX hydrolase
SCNpilot_expt_500_bf_scaffold_2222_10
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8013..8228)
DNA (216bp) protein (72aa)
cold-shock protein n=1 Tax=Oceanicola sp. S124 RepID=UPI000255811C
Cold-shock protein {ECO:0000313|EMBL:KKB09970.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_expt_500_bf_scaffold_2222_11
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8523..8798)
DNA (276bp) protein (92aa)
17 kDa surface antigen family protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LMT3_RHITR
Uncharacterized protein {ECO:0000313|EMBL:KKB79955.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
17 kDa surface antigen family protein
SCNpilot_expt_500_bf_scaffold_2222_12
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8869..9258)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000375E87E
Uncharacterized protein {ECO:0000313|EMBL:KKB09972.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2222_13
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9318..10715
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REX7_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC30956.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein; K03327 multidrug resistance protein, MATE family
SCNpilot_expt_500_bf_scaffold_2222_14
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10712..11248)
DNA (537bp) protein (179aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
tRNA delta(2)-isopentenylpyrophosphate transferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75]
tRNA dimethylallyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFB7_PELHB
SCNpilot_expt_500_bf_scaffold_2222_15
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11568..12440
DNA (873bp) protein (291aa)
phosphoserine phosphatase; K01079 phosphoserine phosphatase [EC:3.1.3.3]
Phosphoserine phosphatase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFB8_PELHB
Phosphoserine phosphatase {ECO:0000313|EMBL:KKB09974.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_2222_16
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12518..13630)
DNA (1113bp) protein (371aa)
HflC protein; K04087 membrane protease subunit HflC [EC:3.4.-.-] rbh
HflC protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFC2_PELHB rbh
Membrane protein {ECO:0000313|EMBL:KKB09982.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_2222_17
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13633..14733)
DNA (1101bp) protein (367aa)
HflK protein; K04088 membrane protease subunit HflK [EC:3.4.-.-] rbh
Phydrolase serine protease transmembrane subunit K protein n=1 Tax=uncultured bacterium RepID=E4WMG0_9BACT rbh
Tail fiber protein {ECO:0000313|EMBL:KFL28964.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_500_bf_scaffold_2222_18
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14797..15321)
DNA (525bp) protein (175aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
dihydrofolate reductase; K00287 dihydrofolate reductase [EC:1.5.1.3]
Dihydrofolate reductase n=1 Tax=uncultured bacterium RepID=E4WMG1_9BACT
SCNpilot_expt_500_bf_scaffold_2222_19

Not on your lists

comp(15318..15797)
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=E4WMG4_9BACT
Acetyltransferase (GNAT) family {ECO:0000313|EMBL:AIA13440.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
histone acetyltransferase HPA2-related acetyltransferase
SCNpilot_expt_500_bf_scaffold_2222_20
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15833..16888)
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036A3272
Uncharacterized protein {ECO:0000313|EMBL:KFL28966.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2222_21
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16967..17296)
DNA (330bp) protein (110aa)
Phosphoribosyl-ATP pyrophosphohydrolase-like protein n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QKX2_BRESC
Uncharacterized protein {ECO:0000313|EMBL:KFC66346.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
phosphoribosyl-ATP pyrophosphohydrolase-like protein
SCNpilot_expt_500_bf_scaffold_2222_22
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17293..18087)
DNA (795bp) protein (265aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
thymidylate synthase; K00560 thymidylate synthase [EC:2.1.1.45] rbh
Thymidylate synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFD0_PELHB rbh
SCNpilot_expt_500_bf_scaffold_2222_23
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18099..18641)
DNA (543bp) protein (181aa)
Uncharacterized protein n=2 Tax=Rhizobium meliloti RepID=Q1WLI9_SINMM
Membrane protein {ECO:0000313|EMBL:KFL28970.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2222_24
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18835..19035
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XN31_SORCE
Uncharacterized protein {ECO:0000313|EMBL:KFL27476.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2222_25
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19038..19364)
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB09975.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
Displaying 25 items

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