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SCNpilot_expt_500_bf_scaffold_2245

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2245_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..556
DNA (555bp) protein (185aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
3-oxoacyl-ACP synthase; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGJ2_PELHB
SCNpilot_expt_500_bf_scaffold_2245_2
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1212..1805
DNA (594bp) protein (198aa)
Protein YceG like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGJ3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB09172.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
protein YceG like protein; K07082 UPF0755 protein
SCNpilot_expt_500_bf_scaffold_2245_3
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1823..2692
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00037DEB76
Uncharacterized protein {ECO:0000313|EMBL:KFL30554.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2245_4
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2702..3340
DNA (639bp) protein (213aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
guanylate kinase; K00942 guanylate kinase [EC:2.7.4.8] rbh
Guanylate kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGJ5_PELHB rbh
SCNpilot_expt_500_bf_scaffold_2245_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3507..4736
DNA (1230bp) protein (410aa)
Permeases of the major facilitator superfamily n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCQ2_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB09174.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
permeases of the major facilitator superfamily; K08224 MFS transporter, YNFM family, putative membrane transport protein rbh
SCNpilot_expt_500_bf_scaffold_2245_6
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4769..6556)
DNA (1788bp) protein (596aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
4-hydroxythreonine-4-phosphate dehydrogenase; K00097 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] rbh
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGJ9_PELHB rbh
SCNpilot_expt_500_bf_scaffold_2245_7
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6651..7625)
DNA (975bp) protein (325aa)
SurA N-terminal domain family protein; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
SurA N-terminal domain family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGK0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL30549.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_500_bf_scaffold_2245_8
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7648..8718)
DNA (1071bp) protein (357aa)
Permease YjgP/YjgQ n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGK2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB81151.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
permease YjgP/YjgQ; K11720 lipopolysaccharide export system permease protein
SCNpilot_expt_500_bf_scaffold_2245_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8715..9116)
DNA (402bp) protein (134aa)
Permease YjgP/YjgQ n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGK3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB09179.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
permease YjgP/YjgQ; K07091 lipopolysaccharide export system permease protein
SCNpilot_expt_500_bf_scaffold_2245_10
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9088..9732)
DNA (645bp) protein (215aa)
Permease YjgP/YjgQ n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGK3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB81150.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
permease YjgP/YjgQ; K07091 lipopolysaccharide export system permease protein
SCNpilot_expt_500_bf_scaffold_2245_11
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9783..10325
DNA (543bp) protein (181aa)
DNA polymerase III subunit chi; K02339 DNA polymerase III subunit chi [EC:2.7.7.7]
DNA polymerase III chi subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGK8_PELHB
DNA polymerase III chi subunit {ECO:0000313|EMBL:KFC67231.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_expt_500_bf_scaffold_2245_12
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10322..10897
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000365F23D
Membrane protein {ECO:0000313|EMBL:KKC39678.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2245_13
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10952..11773)
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00035C62D7
Uncharacterized protein {ECO:0000313|EMBL:KFL30543.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2245_14
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11805..11990)
DNA (186bp) protein (62aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB83080.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
SCNpilot_expt_500_bf_scaffold_2245_15
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11929..12630)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3C9V2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC67232.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2245_16
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12705..13136)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0E994_CAUCE
Cupin {ECO:0000313|EMBL:KKB81147.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein; K09705 hypothetical protein
SCNpilot_expt_500_bf_scaffold_2245_17
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13133..15010)
DNA (1878bp) protein (626aa)
ABC transporter ATP-binding protein uup n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGL1_PELHB rbh
Glycosyl transferase family 1 {ECO:0000313|EMBL:KKB09183.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
ABC transporter ATP-binding protein uup; K06158 ATP-binding cassette, subfamily F, member 3 rbh
SCNpilot_expt_500_bf_scaffold_2245_18
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15205..15621
DNA (417bp) protein (139aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB09184.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_2245_19
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15800..16984
DNA (1185bp) protein (395aa)
diguanylate cyclase n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0D0A rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE57036.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
diguanylate cyclase
SCNpilot_expt_500_bf_scaffold_2245_20
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17078..17500
DNA (423bp) protein (141aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
nucleoside diphosphate kinase; K00940 nucleoside-diphosphate kinase [EC:2.7.4.6]
nucleoside diphosphate kinase n=1 Tax=Kiloniella laminariae RepID=UPI00036B5BEB
SCNpilot_expt_500_bf_scaffold_2245_21
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17652..18776
DNA (1125bp) protein (375aa)
DEAD/DEAH box helicase; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
helicase n=1 Tax=Ochrobactrum anthropi RepID=UPI0002899357
Helicase {ECO:0000313|EMBL:KKB09185.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_2245_22
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18773..19609
DNA (837bp) protein (279aa)
DEAD/DEAH box protein, ATP-dependent RNA helicase; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
DNA/RNA helicase, superfamily II n=1 Tax=Phyllobacterium sp. YR531 RepID=J3C633_9RHIZ
Helicase {ECO:0000313|EMBL:KKB09185.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_2245_23
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19667..20278)
DNA (612bp) protein (204aa)
Transcriptional regulator n=1 Tax=Sagittula stellata E-37 RepID=A3JY53_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKB10257.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
transcriptional regulator, MarR family
SCNpilot_expt_500_bf_scaffold_2245_24
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20419..22005
DNA (1587bp) protein (529aa)
Drug resistance transporter EmrB/QacA subfamily protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGL9_PELHB rbh
DSBA oxidoreductase {ECO:0000313|EMBL:KKB09186.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
drug resistance transporter EmrB/QacA subfamily protein rbh
SCNpilot_expt_500_bf_scaffold_2245_25
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22057..23928)
DNA (1872bp) protein (624aa)
hypothetical protein n=1 Tax=Hirschia maritima RepID=UPI00036192EC rbh
Membrane protein {ECO:0000313|EMBL:KFL30528.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_2245_26
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23928..24566)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Hirschia maritima RepID=UPI000362C08C
Uncharacterized protein {ECO:0000313|EMBL:KFL30527.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2245_27
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24866..25534
DNA (669bp) protein (223aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB09187.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_2245_28
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25740..27830
DNA (2091bp) protein (697aa)
Anaerobic dehydrogenase, typically selenocysteine-containing n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGM2_PELHB rbh
Dehydrogenase {ECO:0000313|EMBL:KKB09188.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
anaerobic dehydrogenase, typically selenocysteine-containing rbh
SCNpilot_expt_500_bf_scaffold_2245_29
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27894..28661)
DNA (768bp) protein (256aa)
Putative permease n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGM5_PELHB rbh
Permease {ECO:0000313|EMBL:KKB09189.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
putative permease; K07090 rbh
SCNpilot_expt_500_bf_scaffold_2245_30
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28942..29382
DNA (441bp) protein (147aa)
Putative uncharacterized protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JFY1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB09190.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
Displaying items 1-30 of 32 in total

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