ggKbase home page

SCNpilot_expt_500_bf_scaffold_2388

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2388_1
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..424)
DNA (423bp) protein (141aa)
Methyltransferase n=1 Tax=Rhizobium lupini HPC(L) RepID=K5CPH4_RHILU
Uncharacterized protein {ECO:0000313|EMBL:KKB80099.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Methyltransferase
SCNpilot_expt_500_bf_scaffold_2388_2
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

931..1140
DNA (210bp) protein (70aa)
Cold shock protein CspA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGU3_PELHB
Cold-shock protein {ECO:0000313|EMBL:KKB10424.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
cold shock protein CspA; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_expt_500_bf_scaffold_2388_3
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1344..2423)
DNA (1080bp) protein (360aa)
Glucose sorbosone dehydrogenase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LJX5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL31895.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
glucose sorbosone dehydrogenase
SCNpilot_expt_500_bf_scaffold_2388_4
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2776..3249
DNA (474bp) protein (158aa)
Transcription elongation factor GreA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGU5_PELHB
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
transcription elongation factor GreA; K03624 transcription elongation factor GreA
SCNpilot_expt_500_bf_scaffold_2388_5
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3406..4356
DNA (951bp) protein (317aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] rbh
Thioredoxin reductase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGU6_PELHB rbh
SCNpilot_expt_500_bf_scaffold_2388_6
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4471..5364
DNA (894bp) protein (298aa)
Transcriptional regulator, LysR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGU7_PELHB rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KKB10134.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_2388_7
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5522..6229
DNA (708bp) protein (236aa)
Haloacid dehalogenase domain-containing protein hydrolase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C3C6_9RHIZ
HAD family hydrolase {ECO:0000313|EMBL:KFL31899.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
haloacid dehalogenase-like hydrolase; K07025 putative hydrolase of the HAD superfamily
SCNpilot_expt_500_bf_scaffold_2388_8
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6386..6979
DNA (594bp) protein (198aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I0A9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFL31900.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_expt_500_bf_scaffold_2388_9
unknown

Not on your lists

6937..7611
DNA (675bp) protein (225aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2388_10
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8006..9151
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T782_CAUSK
Uncharacterized protein {ECO:0000313|EMBL:KKB10137.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2388_11
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9043..10299)
DNA (1257bp) protein (419aa)
Aspartate aminotransferase {ECO:0000313|EMBL:KKB10138.1}; EC=2.6.1.1 {ECO:0000313|EMBL:KKB10138.1};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
aspartate aminotransferase; K00812 aspartate aminotransferase [EC:2.6.1.1] rbh
Aspartate aminotransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R644_PELHB rbh
SCNpilot_expt_500_bf_scaffold_2388_12
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10500..10796
DNA (297bp) protein (99aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB78453.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
SCNpilot_expt_500_bf_scaffold_2388_13
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10922..11350
DNA (429bp) protein (143aa)
Putative signal transduction protein with CBS domains n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C1B8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB86605.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
signal-transduction protein
SCNpilot_expt_500_bf_scaffold_2388_14
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11584..12255
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB89_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL31914.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2388_15
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12430..13662
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2GN01_9RHOB rbh
NifS {ECO:0000313|EMBL:KKB10425.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
class V aminotransferase rbh
SCNpilot_expt_500_bf_scaffold_2388_16
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13817..14722
DNA (906bp) protein (302aa)
Permease of the drug/metabolite transporter (DMT) superfamily n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R646_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB10142.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
permease of the drug/metabolite transporter (DMT) superfamily rbh
SCNpilot_expt_500_bf_scaffold_2388_17
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14778..15872)
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VGA9_RHILT rbh
Uncharacterized protein {ECO:0000313|EMBL:KKC41425.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_2388_18
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16153..16530)
DNA (378bp) protein (126aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB80116.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_expt_500_bf_scaffold_2388_19
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16527..16916)
DNA (390bp) protein (130aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB10144.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_2388_20
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17158..17613)
DNA (456bp) protein (152aa)
GNAT family acetyltransferase (EC:2.3.1.-)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI00036988B6
Uncharacterized protein {ECO:0000313|EMBL:KKB10145.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_500_bf_scaffold_2388_21
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17720..18178
DNA (459bp) protein (153aa)
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
thymidine kinase; K00857 thymidine kinase [EC:2.7.1.21]
Thymidine kinase n=1 Tax=Asticcacaulis sp. AC466 RepID=V4P9C1_9CAUL
Displaying 21 items

View Taxonomy