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SCNpilot_expt_500_bf_scaffold_4809

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4809_1
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1118)
DNA (1116bp) protein (372aa)
Conjugation TrbI family protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4I3_9BRAD rbh
Conjugation TrbI family protein {ECO:0000313|EMBL:EFI52863.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
trbI2; conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10 rbh
SCNpilot_expt_500_bf_scaffold_4809_2
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1115..2098)
DNA (984bp) protein (328aa)
P-type conjugative transfer protein TrbG n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4I2_9BRAD rbh
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:EFI52862.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9 rbh
SCNpilot_expt_500_bf_scaffold_4809_3
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2095..2784)
DNA (690bp) protein (230aa)
Conjugal transfer protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4I1_9BRAD rbh
Conjugal transfer protein {ECO:0000313|EMBL:EFI52861.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
SCNpilot_expt_500_bf_scaffold_4809_4
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2781..4160)
DNA (1380bp) protein (460aa)
P-type conjugative transfer protein TrbL n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4I0_9BRAD rbh
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:EFI52860.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
trbL1; P-type conjugative transfer protein TrbL; K07344 type IV secretion system protein TrbL rbh
SCNpilot_expt_500_bf_scaffold_4809_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4164..4451)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4H9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG06683.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4809_6
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4462..5217)
DNA (756bp) protein (252aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4H8_9BRAD rbh
P-type conjugative transfer protein TrbJ {ECO:0000313|EMBL:EFI52858.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
P-type conjugative transfer protein TrbJ
SCNpilot_expt_500_bf_scaffold_4809_7
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5214..6485)
DNA (1272bp) protein (424aa)
CagE, TrbE, VirB component of type IV transporter system, conserved region n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4H7_9BRAD
CagE, TrbE, VirB component of type IV transporter system, conserved region {ECO:0000313|EMBL:EFI52857.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
SCNpilot_expt_500_bf_scaffold_4809_8
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6482..7642)
DNA (1161bp) protein (387aa)
CagE, TrbE, VirB component of type IV transporter system, conserved region n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4H7_9BRAD
CagE, TrbE, VirB component of type IV transporter system, conserved region {ECO:0000313|EMBL:EFI52857.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
trbE2; conjugal transfer protein trbE; K03199 type IV secretion system protein VirB4
SCNpilot_expt_500_bf_scaffold_4809_9
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7656..7937)
DNA (282bp) protein (94aa)
Conjugal transfer protein TrbB n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4H6_9BRAD
Conjugal transfer protein TrbB {ECO:0000313|EMBL:EFI52856.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
conjugal transfer protein TrbB; K03198 type IV secretion system protein VirB3
SCNpilot_expt_500_bf_scaffold_4809_10
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7937..8164)
DNA (228bp) protein (76aa)
Conjugal transfer protein TrbC n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4H5_9BRAD
Conjugal transfer protein TrbC {ECO:0000313|EMBL:EFI52855.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
conjugal transfer protein; TrbC; K03197 type IV secretion system protein VirB2
SCNpilot_expt_500_bf_scaffold_4809_11
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8213..9193)
DNA (981bp) protein (327aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4H4_9BRAD rbh
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:EFI52854.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
trbB2; P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11 rbh
SCNpilot_expt_500_bf_scaffold_4809_12
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9438..9770)
DNA (333bp) protein (111aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
Ribonuclease VapC n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4H2_9BRAD
putative virulence associated protein; K07062
SCNpilot_expt_500_bf_scaffold_4809_13
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9767..10027)
DNA (261bp) protein (87aa)
SpoVT/AbrB domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4H1_9BRAD
SpoVT/AbrB domain protein {ECO:0000313|EMBL:EFI52851.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
putative virulence-associated protein homologue
SCNpilot_expt_500_bf_scaffold_4809_14
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10088..10210)
DNA (123bp) protein (41aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4H0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI52850.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
Displaying 14 items

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