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SCNpilot_expt_500_bf_scaffold_3029

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3029_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..865)
DNA (864bp) protein (288aa)
LysR substrate-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA3_ALIDB rbh
LysR family transcriptional regulator rbh
LysR substrate-binding protein {ECO:0000313|EMBL:ADV00924.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_3029_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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996..1862
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZA4_ALIDB rbh
hypothetical protein rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAO24507.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_3029_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1918..2490
DNA (573bp) protein (191aa)
L-carnitine dehydratase/bile acid-inducible protein F n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA5_ALIDB
l-carnitine dehydratase/bile acid-inducible protein f
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ADV00926.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_3029_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2469..3113
DNA (645bp) protein (215aa)
Formyl-CoA transferase {ECO:0000313|EMBL:AEB83647.1}; EC=2.8.3.16 {ECO:0000313|EMBL:AEB83647.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
L-carnitine dehydratase/bile acid-inducible protein F n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA5_ALIDB
l-carnitine dehydratase/bile acid-inducible protein f
SCNpilot_expt_500_bf_scaffold_3029_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3110..4954
DNA (1845bp) protein (615aa)
Isovaleryl-CoA dehydrogenase (EC:1.3.99.10) rbh
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:AEB83646.1}; EC=1.3.99.10 {ECO:0000313|EMBL:AEB83646.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Isovaleryl-CoA dehydrogenase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GC72_ALIDK rbh
SCNpilot_expt_500_bf_scaffold_3029_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4958..5233)
DNA (276bp) protein (92aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA7_ALIDB
uncharacterized LOC100495675
Uncharacterized protein {ECO:0000313|EMBL:AEB83645.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_3029_7
unknown

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5389..5601
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3029_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6004..7176)
DNA (1173bp) protein (391aa)
l-lactate dehydrogenase (cytochrome) (EC:1.1.2.3); K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] rbh
L-lactate dehydrogenase (Cytochrome) {ECO:0000313|EMBL:AEB83644.1}; EC=1.1.2.3 {ECO:0000313|EMBL:AEB83644.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
L-lactate dehydrogenase (Cytochrome) n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA8_ALIDB rbh
SCNpilot_expt_500_bf_scaffold_3029_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7268..7777)
DNA (510bp) protein (170aa)
OmpA/MotB domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZA9_ALIDB
OmpA/MotB domain-containing protein
OmpA/MotB domain protein {ECO:0000313|EMBL:AEB83643.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_3029_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7801..9036)
DNA (1236bp) protein (412aa)
Diguanylate cyclase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZB0_ALIDB rbh
diguanylate cyclase rbh
Diguanylate cyclase {ECO:0000313|EMBL:ADV00931.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_500_bf_scaffold_3029_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9036..9557)
DNA (522bp) protein (174aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZB1_ALIDB rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEB83641.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_500_bf_scaffold_3029_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9622..11787)
DNA (2166bp) protein (722aa)
penicillin-binding protein 1c (EC:2.4.1.129); K05367 penicillin-binding protein 1C [EC:2.4.1.-] rbh
Penicillin-binding protein 1C {ECO:0000313|EMBL:ADV00933.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ADV00933.1};; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Penicillin-binding protein 1C n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZB2_ALIDB rbh
SCNpilot_expt_500_bf_scaffold_3029_13
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11787..12662)
DNA (876bp) protein (292aa)
methylglyoxal synthase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036FFB0B rbh
Methylglyoxal synthase {ECO:0000313|EMBL:GAD22447.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_3029_14
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12789..13001
DNA (213bp) protein (71aa)
Uncharacterized protein n=2 Tax=Acidovorax RepID=A1WAZ9_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34090.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Displaying 14 items

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