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SCNpilot_expt_500_p_scaffold_401

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Displaying items 1-30 of 44 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_401_1
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..373
DNA (372bp) protein (124aa)
Plasmid partitioning protein n=1 Tax=Pseudomonas aeruginosa BWHPSA006 RepID=U8VM13_PSEAI
cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein
ATPase {ECO:0000313|EMBL:KIL06303.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
SCNpilot_expt_500_p_scaffold_401_2
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

370..642
DNA (273bp) protein (91aa)
Regulator of plasmid copy number n=2 Tax=Burkholderiaceae RepID=Q1LNY5_RALME
parG; regulator of plasmid copy number
Uncharacterized protein {ECO:0000313|EMBL:ERJ35803.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
SCNpilot_expt_500_p_scaffold_401_3
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

639..1184
DNA (546bp) protein (182aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C054_9BURK rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHL21970.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_401_4
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1181..1756
DNA (576bp) protein (192aa)
Conjugal transfer protein TraF n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IL24_BORPD
traF1; conjugal transfer protein TraF
Conjugal transfer protein TraF {ECO:0000313|EMBL:CAP42530.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_500_p_scaffold_401_5
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2205..4190
DNA (1986bp) protein (662aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2X408_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD44930.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_401_6
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4176..5111)
DNA (936bp) protein (312aa)
Protein FdhD homolog n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LP42_9BURK
Protein FdhD homolog {ECO:0000256|HAMAP-Rule:MF_00187, ECO:0000256|SAAS:SAAS00093832}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
fdhD; formate dehydrogenase family accessory protein FdhD; K02379 FdhD protein
SCNpilot_expt_500_p_scaffold_401_7
Burkholderia sp. CCGE1001, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5108..5353)
DNA (246bp) protein (82aa)
formate dehydrogenase subunit alpha n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034BDDA4
formate dehydrogenase subunit alpha
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:ADX56068.1}; TaxID=640510 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. CCGE1001.;"
SCNpilot_expt_500_p_scaffold_401_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5436..7712)
DNA (2277bp) protein (759aa)
fdh; formate dehydrogenase (EC:1.2.1.2) rbh
Oxidoreductase alpha (Molybdopterin) subunit n=2 Tax=Burkholderia multivorans (strain ATCC 17616 / 249) RepID=A9ATN1_BURM1 rbh
Oxidoreductase alpha subunit {ECO:0000313|EMBL:GAO27486.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_p_scaffold_401_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7731..8363)
DNA (633bp) protein (211aa)
Cysteine dioxygenase type I n=1 Tax=Burkholderia phenoliruptrix BR3459a RepID=K0DVP0_9BURK
Cysteine dioxygenase type I {ECO:0000313|EMBL:GAO27485.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Cysteine dioxygenase type I
SCNpilot_expt_500_p_scaffold_401_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8430..9731)
DNA (1302bp) protein (434aa)
glycolate oxidase n=1 Tax=Variovorax paradoxus RepID=UPI00035CEF8A
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
glcF; glycolate oxidase iron-sulfur subunit; K11473 glycolate oxidase iron-sulfur subunit
SCNpilot_expt_500_p_scaffold_401_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9733..10848)
DNA (1116bp) protein (372aa)
FAD-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00037FE9CD
FAD linked oxidase domain-containing protein {ECO:0000313|EMBL:GAO27483.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
fad linked oxidase domain-containing protein; K11472 glycolate oxidase FAD binding subunit
SCNpilot_expt_500_p_scaffold_401_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10826..12328)
DNA (1503bp) protein (501aa)
FAD linked oxidase; K00104 glycolate oxidase [EC:1.1.3.15]
FAD linked oxidase domain protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CX81_VARPS
Glycolate oxidase {ECO:0000313|EMBL:GAO27482.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_p_scaffold_401_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12423..13244)
DNA (822bp) protein (274aa)
Fatty acid hydroxylase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WLW8_VEREI rbh
Fatty acid hydroxylase {ECO:0000313|EMBL:GAO27481.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
fatty acid hydroxylase rbh
SCNpilot_expt_500_p_scaffold_401_14
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13328..14596)
DNA (1269bp) protein (423aa)
Iron-containing alcohol dehydrogenase n=1 Tax=Pseudomonas stutzeri DSM 10701 RepID=I7ACM4_PSEST rbh
Iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:GAO27480.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
iron-containing alcohol dehydrogenase rbh
SCNpilot_expt_500_p_scaffold_401_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14586..15302)
DNA (717bp) protein (239aa)
Hydrolase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2GC39_9BURK
Hydrolase {ECO:0000313|EMBL:GAO27479.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_401_16
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15388..16107
DNA (720bp) protein (240aa)
Transcriptional regulator, GntR family n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WLX8_VEREI rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:GAO27478.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
GntR family transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_401_17
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16153..17571)
DNA (1419bp) protein (473aa)
Putative transporter, Major facilitator superfamily (MFS_1) n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3RC23_CUPTR rbh
major facilitator family transporter; K08369 MFS transporter, putative metabolite:H+ symporter rbh
Putative transporter, Major facilitator superfamily (MFS_1) {ECO:0000313|EMBL:CAQ72448.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
SCNpilot_expt_500_p_scaffold_401_18
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18022..18996)
DNA (975bp) protein (325aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q122U8_POLSJ
LysR family transcriptional regulator {ECO:0000313|EMBL:GAO27471.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
LysR family transcriptional regulator
SCNpilot_expt_500_p_scaffold_401_19
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19138..20928
DNA (1791bp) protein (597aa)
glyoxylate carboligase; K01608 tartronate-semialdehyde synthase [EC:4.1.1.47] rbh
Glyoxylate carboligase {ECO:0000313|EMBL:GAO27470.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Glyoxylate carboligase id=1268761 bin=GWE1_Burkholderiales_65_30 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
SCNpilot_expt_500_p_scaffold_401_20
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21014..21793
DNA (780bp) protein (260aa)
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hydroxypyruvate isomerase (EC:5.3.1.22); K01816 hydroxypyruvate isomerase [EC:5.3.1.22] rbh
Hydroxypyruvate isomerase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q122U6_POLSJ rbh
SCNpilot_expt_500_p_scaffold_401_21
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21824..22732
DNA (909bp) protein (303aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60); K00042 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] rbh
2-hydroxy-3-oxopropionate reductase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q122U5_POLSJ rbh
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:GAO27468.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_p_scaffold_401_22
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22729..24054
DNA (1326bp) protein (442aa)
hydroxypyruvate reductase (EC:1.1.1.81) rbh
Hydroxypyruvate reductase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y407_LEPCP rbh
Hydroxypyruvate reductase {ECO:0000313|EMBL:GAO27467.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_p_scaffold_401_23
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24074..25507
DNA (1434bp) protein (478aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
pykA2; pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40] rbh
Pyruvate kinase n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LN74_RALME rbh
SCNpilot_expt_500_p_scaffold_401_24
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25844..26758
DNA (915bp) protein (305aa)
Transcriptional regulator, LysR family n=2 Tax=Proteobacteria RepID=B2UA73_RALPJ
D-alanyl-D-alanine endopeptidase {ECO:0000313|EMBL:AIJ47396.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
LysR family transcriptional regulator
SCNpilot_expt_500_p_scaffold_401_25
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26783..27010
DNA (228bp) protein (76aa)
hypothetical protein id=12551702 bin=BDI species=Pandoraea sp. RB-44 genus=Pandoraea taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:EPD42112.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_401_26
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27228..29237
DNA (2010bp) protein (670aa)
Conjugal transfer coupling protein TraG n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2ELN6_9BURK
Conjugal transfer protein TraG {ECO:0000313|EMBL:AIJ47713.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
SCNpilot_expt_500_p_scaffold_401_27
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29234..29698
DNA (465bp) protein (155aa)
CopG domain protein DNA-binding domain protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIJ4_ACIET
copg domain-containing protein DNA-binding domain-containing protein
CopG domain protein DNA-binding domain protein {ECO:0000313|EMBL:ACM34932.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_500_p_scaffold_401_28
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29695..30732
DNA (1038bp) protein (346aa)
p-type conjugative transfer atpase trbb n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2EML9_9BURK
Conjugal transfer protein TrbB {ECO:0000313|EMBL:AIJ47392.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
p-type conjugative transfer atpase trbb; K03196 type IV secretion system protein VirB11
SCNpilot_expt_500_p_scaffold_401_29
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30729..31106
DNA (378bp) protein (126aa)
Conjugal transfer protein TrbC n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BTS2_DELAS
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
Conjugal transfer protein TrbC {ECO:0000313|EMBL:ABM43051.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_p_scaffold_401_30
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31103..31375
DNA (273bp) protein (91aa)
Uncharacterized protein n=8 Tax=Proteobacteria RepID=N2D984_PSEAI
putative conjugal transfer TrbD transmembrane protein
Putative conjugal transfer TrbD transmembrane protein {ECO:0000313|EMBL:ABX33082.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
Displaying items 1-30 of 44 in total

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