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SCNpilot_expt_500_p_scaffold_385

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_385_1
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..571)
DNA (570bp) protein (190aa)
Chaperone protein DnaK n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIQ8_9GAMM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
chaperone protein DnaK
SCNpilot_expt_500_p_scaffold_385_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(694..1227)
DNA (534bp) protein (178aa)
Protein GrpE n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIQ7_9GAMM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
molecular chaperone GrpE (heat shock protein)
SCNpilot_expt_500_p_scaffold_385_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1309..2370)
DNA (1062bp) protein (354aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIQ6_9GAMM rbh
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
heat-inducible transcription repressor HrcA
SCNpilot_expt_500_p_scaffold_385_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2548..4218
DNA (1671bp) protein (557aa)
DNA repair protein RecN n=1 Tax=Rhodanobacter denitrificans RepID=M4NH33_9GAMM
DNA replication and repair protein RecN
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_385_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4215..4847)
DNA (633bp) protein (211aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIQ4_9GAMM rbh
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EIL87095.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
SCNpilot_expt_500_p_scaffold_385_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4896..6512
DNA (1617bp) protein (539aa)
Signal transduction histidine kinase, glucose-6-phosphate specific n=1 Tax=Rhodanobacter denitrificans RepID=I4WXH7_9GAMM
signal transduction histidine kinase, glucose-6-phosphate specific
Signal transduction histidine kinase, glucose-6-phosphate specific {ECO:0000313|EMBL:AGG88955.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_385_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6798..7220)
DNA (423bp) protein (141aa)
Fe2+/Zn2+ uptake regulation protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNN9_9GAMM
Fe2+/Zn2+ uptake regulation protein {ECO:0000313|EMBL:EIL88830.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Fe2+/Zn2+ uptake regulation protein
SCNpilot_expt_500_p_scaffold_385_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7300..7761
DNA (462bp) protein (154aa)
Small protein A (TmRNA-binding) n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIQ0_9GAMM
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
small protein A (tmRNA-binding)
SCNpilot_expt_500_p_scaffold_385_9
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7780..8064)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L5G4_FRAAD
hypothetical protein; K09801 hypothetical protein
UPF0125 protein Fraau_1330 {ECO:0000256|HAMAP-Rule:MF_00460}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCNpilot_expt_500_p_scaffold_385_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8057..8509)
DNA (453bp) protein (151aa)
Oligoketide cyclase/lipid transport protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNN6_9GAMM
Oligoketide cyclase/lipid transport protein {ECO:0000313|EMBL:EIL88827.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
oligoketide cyclase/lipid transport protein
SCNpilot_expt_500_p_scaffold_385_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8696..9190
DNA (495bp) protein (165aa)
SsrA-binding protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI75_9GAMM
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SsrA-binding protein
SCNpilot_expt_500_p_scaffold_385_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9373..9792
DNA (420bp) protein (140aa)
DGPFAETKE family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM71_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_p_scaffold_385_13
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9823..10239
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P0P9_AROAE
hypothetical protein; K04750 PhnB protein
Uncharacterized protein {ECO:0000313|EMBL:CAI09115.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_500_p_scaffold_385_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10295..11572
DNA (1278bp) protein (426aa)
RNA polymerase, sigma subunit, ECF family n=1 Tax=Rhodanobacter denitrificans RepID=M4NKW7_9GAMM
RNA polymerase, sigma subunit, ECF family
RNA polymerase, sigma subunit, ECF family {ECO:0000313|EMBL:AGG88406.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_p_scaffold_385_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11673..11897)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8L0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95801.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_385_16
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12037..12327
DNA (291bp) protein (97aa)
Transposase, IS4 n=1 Tax=Rhodanobacter sp. 115 RepID=I4W2R2_9GAMM
Transposase, IS4 {ECO:0000313|EMBL:EIL93753.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_expt_500_p_scaffold_385_17
unknown

Not on your lists

comp(12692..12802)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_385_18
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12870..13298)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI65_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99156.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_500_p_scaffold_385_19
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13295..13678)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0ES92_CUPNN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI76710.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
SCNpilot_expt_500_p_scaffold_385_20
unknown

Not on your lists

comp(13675..14124)
DNA (450bp) protein (150aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_385_21
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14111..14452)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VUM1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU11738.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_385_22
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14452..14979)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L656_FRAAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFC85900.1}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCNpilot_expt_500_p_scaffold_385_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15063..15335)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI60_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99151.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_500_p_scaffold_385_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15367..15597)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI58_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99149.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_385_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15587..16786)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI57_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL99148.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_385_26
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17481..18395)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B54CD8
Uncharacterized protein {ECO:0000313|EMBL:KFN42348.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
SCNpilot_expt_500_p_scaffold_385_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18392..21934)
DNA (3543bp) protein (1181aa)
Curculin-like (Mannose-binding) lectin protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI56_9GAMM rbh
Curculin-like (Mannose-binding) lectin protein {ECO:0000313|EMBL:EIL99147.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
curculin-like (mannose-binding) lectin protein
SCNpilot_expt_500_p_scaffold_385_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21938..22336)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI55_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99146.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_385_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22336..26127)
DNA (3792bp) protein (1264aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI54_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL99145.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_385_30
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26233..26901)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI53_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99144.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
Displaying items 1-30 of 69 in total

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