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SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_EXPT_500_P_unknown_33_106
In projects: SCNPILOT_EXPT_500_P

Consensus taxonomy:

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 106.02 Longest contig: 163.80 Kbp Bin length: 65.70 Mbp GC content: 33.14 %
Contigs count: 9246 Features count: 74211 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 35 BSCG 20 / 51 MC: 11 ASCG 30 / 38 MC: 20
Displaying items 251-300 of 9246 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
SCNpilot_expt_500_p_scaffold_1239 37 22479 bp 34.06 108.37 58.45
SCNpilot_expt_500_p_scaffold_1245 37 33630 bp 32.11 112.74 52.98
SCNpilot_expt_500_p_scaffold_1509 37 30743 bp 34.86 112.51 42.59
SCNpilot_expt_500_p_scaffold_666 36 37737 bp 32.24 107.19 38.76
SCNpilot_expt_500_p_scaffold_2217 36 28597 bp 32.90 111.82 51.43
SCNpilot_expt_500_p_scaffold_941 36 25536 bp 31.12 108.31 50.68
SCNpilot_expt_500_p_scaffold_1832 36 34170 bp 33.25 111.01 58.62
SCNpilot_expt_500_p_scaffold_995 36 23237 bp 32.39 110.03 64.53
SCNpilot_expt_500_p_scaffold_761 36 29384 bp 33.24 111.61 51.90
SCNpilot_expt_500_p_scaffold_4089 36 29483 bp 32.40 111.11 38.27
SCNpilot_expt_500_p_scaffold_1098 36 29925 bp 32.64 111.63 49.52
SCNpilot_expt_500_p_scaffold_1118 36 26208 bp 32.08 111.87 47.48
SCNpilot_expt_500_p_scaffold_1635 36 25414 bp 32.82 109.31 72.26
SCNpilot_expt_500_p_scaffold_792 36 28518 bp 32.99 110.07 52.24
SCNpilot_expt_500_p_scaffold_800 36 36063 bp 34.14 112.92 50.03
SCNpilot_expt_500_p_scaffold_1139 36 35362 bp 33.80 112.35 43.12
SCNpilot_expt_500_p_scaffold_2878
Domain: Metazoa (61.11%)
36 25052 bp 32.23 108.03 45.60
SCNpilot_expt_500_p_scaffold_842 36 29648 bp 31.79 110.89 45.87
SCNpilot_expt_500_p_scaffold_1704 36 29650 bp 33.04 110.25 42.54
SCNpilot_expt_500_p_scaffold_2909 36 27955 bp 33.82 114.45 50.16
SCNpilot_expt_500_p_scaffold_1474 36 27921 bp 33.88 110.50 51.20
SCNpilot_expt_500_p_scaffold_1477 36 23666 bp 34.37 112.96 54.56
SCNpilot_expt_500_p_scaffold_2421 36 25681 bp 33.67 113.34 48.63
SCNpilot_expt_500_p_scaffold_1991 36 25201 bp 33.74 114.30 65.40
SCNpilot_expt_500_p_scaffold_928 35 29880 bp 34.20 112.35 65.65
SCNpilot_expt_500_p_scaffold_3636 35 26300 bp 34.32 113.07 51.23
SCNpilot_expt_500_p_scaffold_1786 35 24442 bp 35.29 116.81 61.68
SCNpilot_expt_500_p_scaffold_695 35 31837 bp 32.63 109.18 59.81
SCNpilot_expt_500_p_scaffold_4793 35 22290 bp 33.05 110.51 58.71
SCNpilot_expt_500_p_scaffold_1048 35 30686 bp 33.05 111.61 53.70
SCNpilot_expt_500_p_scaffold_722 35 30876 bp 34.08 110.49 43.47
SCNpilot_expt_500_p_scaffold_1585 35 31388 bp 31.65 110.34 58.28
SCNpilot_expt_500_p_scaffold_1339 35 31669 bp 33.23 113.08 40.93
SCNpilot_expt_500_p_scaffold_1851 35 26287 bp 33.86 109.60 51.28
SCNpilot_expt_500_p_scaffold_2801 35 30153 bp 35.85 112.05 67.92
SCNpilot_expt_500_p_scaffold_1143 35 34183 bp 32.60 112.23 48.77
SCNpilot_expt_500_p_scaffold_1148 35 20667 bp 31.56 107.68 65.71
SCNpilot_expt_500_p_scaffold_832 35 34469 bp 34.36 110.52 38.77
SCNpilot_expt_500_p_scaffold_2884 35 23869 bp 33.50 114.81 45.98
SCNpilot_expt_500_p_scaffold_2121 35 28351 bp 32.97 111.67 47.71
SCNpilot_expt_500_p_scaffold_2126 35 29626 bp 32.92 108.99 45.78
SCNpilot_expt_500_p_scaffold_1711 35 43136 bp 31.91 108.85 49.50
SCNpilot_expt_500_p_scaffold_1528 34 21853 bp 34.18 114.93 53.70
SCNpilot_expt_500_p_scaffold_1038 34 26056 bp 34.11 112.78 61.29
SCNpilot_expt_500_p_scaffold_1837 34 24773 bp 36.47 112.28 57.27
SCNpilot_expt_500_p_scaffold_1606 34 33403 bp 31.75 111.70 35.22
SCNpilot_expt_500_p_scaffold_2571 34 19607 bp 34.28 111.66 53.19
SCNpilot_expt_500_p_scaffold_4888 34 25191 bp 34.25 110.35 54.33
SCNpilot_expt_500_p_scaffold_1641 34 21779 bp 33.11 109.56 52.65
SCNpilot_expt_500_p_scaffold_5910 34 23524 bp 34.06 111.83 46.19
Displaying items 251-300 of 9246 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.