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SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_EXPT_500_P_unknown_33_106
In projects: SCNPILOT_EXPT_500_P

Consensus taxonomy:

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 106.02 Longest contig: 163.80 Kbp Bin length: 65.70 Mbp GC content: 33.14 %
Contigs count: 9246 Features count: 74211 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 35 BSCG 20 / 51 MC: 11 ASCG 30 / 38 MC: 20
Displaying items 301-350 of 9246 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_p_scaffold_1175 34 27155 bp 32.23 111.42 46.51
SCNpilot_expt_500_p_scaffold_4433 34 25220 bp 32.45 110.95 42.07
SCNpilot_expt_500_p_scaffold_1956 34 30889 bp 34.45 107.17 52.44
SCNpilot_expt_500_p_scaffold_4988 34 24143 bp 35.10 111.19 54.24
SCNpilot_expt_500_p_scaffold_2715 33 23173 bp 32.74 110.68 54.87
SCNpilot_expt_500_p_scaffold_1263 33 24791 bp 33.00 108.70 65.72
SCNpilot_expt_500_p_scaffold_3132 33 22254 bp 34.38 111.19 57.36
SCNpilot_expt_500_p_scaffold_1799 33 23830 bp 32.82 109.58 50.97
SCNpilot_expt_500_p_scaffold_721 33 34455 bp 35.10 113.18 54.08
SCNpilot_expt_500_p_scaffold_1060 33 25598 bp 31.34 110.23 45.24
SCNpilot_expt_500_p_scaffold_1318 33 23309 bp 33.76 107.52 46.23
SCNpilot_expt_500_p_scaffold_1064 33 33488 bp 32.06 108.33 32.46
SCNpilot_expt_500_p_scaffold_2546 33 22762 bp 32.91 115.29 44.69
SCNpilot_expt_500_p_scaffold_3976 33 24196 bp 33.60 112.50 46.89
SCNpilot_expt_500_p_scaffold_1370 33 28534 bp 31.92 111.69 41.29
SCNpilot_expt_500_p_scaffold_783 33 28771 bp 33.90 102.59 77.20
SCNpilot_expt_500_p_scaffold_1134 33 20903 bp 34.69 115.25 59.04
SCNpilot_expt_500_p_scaffold_1401 33 23072 bp 33.17 110.76 48.29
SCNpilot_expt_500_p_scaffold_820 33 34624 bp 32.32 111.43 34.17
SCNpilot_expt_500_p_scaffold_4422 33 19558 bp 33.75 115.82 56.77
SCNpilot_expt_500_p_scaffold_1694 33 22543 bp 33.28 108.18 41.83
SCNpilot_expt_500_p_scaffold_1697 33 27105 bp 34.00 114.01 58.35
SCNpilot_expt_500_p_scaffold_1199
Domain: Metazoa (57.58%)
33 20010 bp 33.25 108.72 67.38
SCNpilot_expt_500_p_scaffold_869 33 26055 bp 32.83 112.03 59.29
SCNpilot_expt_500_p_scaffold_618 33 38385 bp 33.89 102.49 46.88
SCNpilot_expt_500_p_scaffold_657 33 33717 bp 32.94 107.33 43.22
SCNpilot_expt_500_p_scaffold_1520
Domain: Metazoa (62.5%)
32 23379 bp 37.45 113.13 62.67
SCNpilot_expt_500_p_scaffold_930 32 30163 bp 34.21 106.40 42.49
SCNpilot_expt_500_p_scaffold_4259 32 23036 bp 33.30 112.80 48.00
SCNpilot_expt_500_p_scaffold_939 32 24497 bp 34.03 113.03 50.25
SCNpilot_expt_500_p_scaffold_2480 32 24064 bp 33.93 112.64 48.78
SCNpilot_expt_500_p_scaffold_3143 32 21607 bp 33.06 113.39 42.19
SCNpilot_expt_500_p_scaffold_965 32 39753 bp 39.49 98.29 58.30
SCNpilot_expt_500_p_scaffold_1575 32 28928 bp 33.17 112.69 55.56
SCNpilot_expt_500_p_scaffold_1066 32 39669 bp 33.18 110.81 53.97
SCNpilot_expt_500_p_scaffold_1067
Domain: Metazoa (50%)
32 23771 bp 35.32 110.41 52.11
SCNpilot_expt_500_p_scaffold_2780 32 26565 bp 32.71 113.21 36.66
SCNpilot_expt_500_p_scaffold_741 32 34331 bp 32.79 100.61 64.11
SCNpilot_expt_500_p_scaffold_2793 32 26632 bp 34.85 113.19 54.44
SCNpilot_expt_500_p_scaffold_4337 32 25138 bp 34.33 112.05 54.11
SCNpilot_expt_500_p_scaffold_2805 32 22482 bp 33.76 113.99 57.09
SCNpilot_expt_500_p_scaffold_1622 32 23624 bp 32.81 107.63 66.67
SCNpilot_expt_500_p_scaffold_2343 32 30307 bp 36.00 111.35 75.75
SCNpilot_expt_500_p_scaffold_811 32 30385 bp 33.56 108.46 36.62
SCNpilot_expt_500_p_scaffold_1411 32 26525 bp 32.30 109.12 43.34
SCNpilot_expt_500_p_scaffold_1924 32 24226 bp 32.22 112.36 62.39
SCNpilot_expt_500_p_scaffold_1174 32 27014 bp 33.83 111.29 49.36
SCNpilot_expt_500_p_scaffold_3031 32 34751 bp 31.06 110.18 38.74
SCNpilot_expt_500_p_scaffold_2125 32 23686 bp 32.78 113.31 47.17
SCNpilot_expt_500_p_scaffold_1207 32 22209 bp 33.66 111.01 60.49
Displaying items 301-350 of 9246 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.