ggKbase home page

SCNpilot_expt_500_p_scaffold_220

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_220_1
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

779..4213
DNA (3435bp) protein (1145aa)
hypothetical protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI00034DB72E rbh
PAS domain-containing protein rbh
PAS domain S-box {ECO:0000313|EMBL:AGA31577.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCNpilot_expt_500_p_scaffold_220_2
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4179..5078
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI0003485EDC rbh
diguanylate cyclase (GGDEF) domain-containing protein
Tax=GWC2_Geobacteraceae_53_11_curated
SCNpilot_expt_500_p_scaffold_220_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5427..6233
DNA (807bp) protein (269aa)
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHI4_9PROT rbh
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases {ECO:0000313|EMBL:CCU61957.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
transcriptional regulator-like protein
SCNpilot_expt_500_p_scaffold_220_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6679..9249
DNA (2571bp) protein (857aa)
TonB-dependent receptor n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGH6_9PROT rbh
TonB-dependent receptor {ECO:0000313|EMBL:CCU61318.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
TonB-dependent receptor protein
SCNpilot_expt_500_p_scaffold_220_5
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(9363..10265)
DNA (903bp) protein (301aa)
Filamentous hemagglutinin family outer membrane protein n=1 Tax=Calothrix sp. PCC 7507 RepID=K9PNG9_9CYAN
filamentous hemagglutinin family outer membrane protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
SCNpilot_expt_500_p_scaffold_220_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10625..12466)
DNA (1842bp) protein (614aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B200D
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Na+/H+ antiporter NhaA; K03313 Na+:H+ antiporter, NhaA family
SCNpilot_expt_500_p_scaffold_220_7
BJP_IG2158_Methylococcales_50_91, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12640..13206)
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI00036378EC
lipoprotein
Tax=BJP_IG2158_Methylococcales_50_91
SCNpilot_expt_500_p_scaffold_220_8
BJP_IG2158_Methylococcales_50_91, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13203..14129)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI0003613C99
mammalian cell entry protein; K02067 putative ABC transport system substrate-binding protein
Tax=BJP_IG2158_Methylococcales_50_91
SCNpilot_expt_500_p_scaffold_220_9
BJP_IG2158_Methylococcales_50_91, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14122..14904)
DNA (783bp) protein (261aa)
ABC-type transport system involved in resistance to organic solvents, ATPase component n=1 Tax=Methylomicrobium album BG8 RepID=H8GMG9_METAL rbh
ABC transporter ATP-binding protein; K02065 putative ABC transport system ATP-binding protein rbh
Tax=BJP_IG2158_Methylococcales_50_91
SCNpilot_expt_500_p_scaffold_220_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14901..16037)
DNA (1137bp) protein (379aa)
Putative uncharacterized protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IS02_9GAMM rbh
ABC transporter permease {ECO:0000313|EMBL:KIO48240.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
ABC transporter; K02066 putative ABC transport system permease protein rbh
SCNpilot_expt_500_p_scaffold_220_11
unknown

Not on your lists

16337..16573
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_220_12
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16713..17378)
DNA (666bp) protein (222aa)
Arsenical pump membrane protein n=1 Tax=Leptospirillum ferriphilum (strain ML-04) RepID=J9ZEP4_LEPFM
arsenite membrane pump,arsB
Arsenical pump membrane protein {ECO:0000256|RuleBase:RU004993}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_500_p_scaffold_220_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17380..18003)
DNA (624bp) protein (208aa)
Arsenical pump membrane protein n=1 Tax=Acinetobacter nosocomialis 28F RepID=U4Q6I6_9GAMM
Arsenical pump membrane protein {ECO:0000256|RuleBase:RU004993, ECO:0000313|EMBL:KIO49027.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
arsenical pump membrane protein; K03893 arsenical pump membrane protein
SCNpilot_expt_500_p_scaffold_220_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18128..18625)
DNA (498bp) protein (166aa)
protein tyrosine phosphatase; K03741 arsenate reductase [EC:1.20.4.1]
ArsC family transcriptional regulator n=1 Tax=Pseudomonas aeruginosa HB13 RepID=U1E3V7_PSEAI
Arsenate reductase {ECO:0000313|EMBL:KIO49026.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_220_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18631..19107)
DNA (477bp) protein (159aa)
glyoxalase n=1 Tax=Cupriavidus sp. WS RepID=UPI00037A561D
Glyoxalase {ECO:0000313|EMBL:KIO49025.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
glyoxalase/bleomycin resistance protein/dioxygenase
SCNpilot_expt_500_p_scaffold_220_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19118..19750)
DNA (633bp) protein (211aa)
Transcriptional regulator, ArsR family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIA2_9PROT
ArsR family transcriptional regulator {ECO:0000313|EMBL:KIO49024.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
arsR; transcription regulator protein, arsenical resistance operon repressor
SCNpilot_expt_500_p_scaffold_220_17
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19995..21185
DNA (1191bp) protein (397aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
S-adenosylmethionine; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] rbh
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJU5_9PROT rbh
SCNpilot_expt_500_p_scaffold_220_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21194..22300
DNA (1107bp) protein (369aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] rbh
Queuine tRNA-ribosyltransferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=TGT_NITMU rbh
SCNpilot_expt_500_p_scaffold_220_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22335..22670
DNA (336bp) protein (112aa)
Preprotein translocase subunit YajC (TC 3.A.5.1.1) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLY2_9PROT
Preprotein translocase subunit YajC {ECO:0000313|EMBL:KIO49312.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC
SCNpilot_expt_500_p_scaffold_220_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22746..24590
DNA (1845bp) protein (615aa)
Protein translocase subunit SecD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL92_9PROT rbh
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
secD; preprotein translocase subunit SecD; K03072 preprotein translocase subunit SecD rbh
SCNpilot_expt_500_p_scaffold_220_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24706..25572
DNA (867bp) protein (289aa)
Protein-export membrane protein SecF n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJU1_9PROT rbh
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF
SCNpilot_expt_500_p_scaffold_220_22
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25677..26357
DNA (681bp) protein (227aa)
DedA protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DWT1_9PROT rbh
DedA protein {ECO:0000313|EMBL:CCU63700.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K03975 membrane-associated protein rbh
SCNpilot_expt_500_p_scaffold_220_23
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26518..27618)
DNA (1101bp) protein (367aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hemH; ferrochelatase (EC:4.99.1.1); K01772 ferrochelatase [EC:4.99.1.1] rbh
Ferrochelatase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL63_9PROT rbh
SCNpilot_expt_500_p_scaffold_220_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27814..28833)
DNA (1020bp) protein (340aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLX8_9PROT rbh
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hrcA; heat-inducible transcription repressor; K03705 heat-inducible transcriptional repressor rbh
SCNpilot_expt_500_p_scaffold_220_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29136..30023
DNA (888bp) protein (296aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
ppnK; NAD(+)/NADH kinase family protein (EC:2.7.1.23); K00858 NAD+ kinase [EC:2.7.1.23] rbh
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJT5_9PROT rbh
SCNpilot_expt_500_p_scaffold_220_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29990..31693
DNA (1704bp) protein (568aa)
DNA repair protein RecN n=1 Tax=Nitrosospira sp. APG3 RepID=M5DWS4_9PROT rbh
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N) rbh
SCNpilot_expt_500_p_scaffold_220_27
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31753..32322)
DNA (570bp) protein (190aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
GTP cyclohydrolase I (EC:3.5.4.16); K01495 GTP cyclohydrolase I [EC:3.5.4.16] rbh
GTP cyclohydrolase 1 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLX4_9PROT rbh
SCNpilot_expt_500_p_scaffold_220_28
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32585..33406
DNA (822bp) protein (274aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:CCU63691.1}; EC=3.1.11.2 {ECO:0000313|EMBL:CCU63691.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
exodeoxyribonuclease III (EC:3.1.11.2); K01142 exodeoxyribonuclease III [EC:3.1.11.2] rbh
Exodeoxyribonuclease III n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJS9_9PROT rbh
SCNpilot_expt_500_p_scaffold_220_29
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33471..34205)
DNA (735bp) protein (245aa)
Transcriptional activator protein LuxR n=1 Tax=Nitrosospira sp. APG3 RepID=M5DWR6_9PROT rbh
LuxR family transcriptional regulator {ECO:0000313|EMBL:KIO49301.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
LuxR family transcriptional regulator; K07782 LuxR family transcriptional regulator rbh
SCNpilot_expt_500_p_scaffold_220_30
unknown

Not on your lists

34373..34483
DNA (111bp) protein (37aa)

This feature has no annotations

Displaying items 1-30 of 104 in total

View Taxonomy