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SCNpilot_expt_500_p_scaffold_220

Search features with annotation key words

Displaying items 31-60 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_220_31
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34622..35689)
DNA (1068bp) protein (356aa)
Regulatory protein, RpfE type n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLX1_9PROT rbh
Regulatory protein, RpfE type {ECO:0000313|EMBL:CCU63688.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_220_32
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35917..37296)
DNA (1380bp) protein (460aa)
TldE/PmbA protein, part of proposed TldE/TldD proteolytic complex n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL81_9PROT rbh
TldE/PmbA protein, part of proposed TldE/TldD proteolytic complex {ECO:0000313|EMBL:CCU63687.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
peptidase U62, modulator of DNA gyrase; K03592 PmbA protein rbh
SCNpilot_expt_500_p_scaffold_220_33
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37412..37957
DNA (546bp) protein (182aa)
FIG138315: Putative alpha helix protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DWQ8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO49298.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K09889 ribosome-associated protein
SCNpilot_expt_500_p_scaffold_220_34
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37984..39090)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLW7_9PROT rbh
Transglutaminase {ECO:0000313|EMBL:KIO49297.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
transglutaminase-like protein rbh
SCNpilot_expt_500_p_scaffold_220_35
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39190..39876
DNA (687bp) protein (229aa)
Phospholipase/Carboxylesterase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL78_9PROT rbh
Carboxylesterase {ECO:0000313|EMBL:KIO49296.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
phospholipase/carboxylesterase; K06999 phospholipase/carboxylesterase
SCNpilot_expt_500_p_scaffold_220_36
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40169..40633
DNA (465bp) protein (155aa)
Response regulator receiver domain protein (CheY-like) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJS1_9PROT
Response regulator receiver protein {ECO:0000313|EMBL:KIO49295.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
response regulator receiver domain-containing protein
SCNpilot_expt_500_p_scaffold_220_37
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40661..42160
DNA (1500bp) protein (500aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DWQ0_9PROT rbh
periplasmic sensor signal transduction histidine kinase rbh
SCNpilot_expt_500_p_scaffold_220_38
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42216..42371)
DNA (156bp) protein (52aa)
Isrso8-transposase orfb protein n=3 Tax=Burkholderia pseudomallei RepID=I1WW13_BURPE
integrase core domain protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
SCNpilot_expt_500_p_scaffold_220_39
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42415..42654)
DNA (240bp) protein (80aa)
PilT protein domain-containing protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B2F6_9PROT
PilT protein domain-containing protein
PilT protein domain-containing protein {ECO:0000313|EMBL:BAN34852.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_500_p_scaffold_220_40
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42774..42986)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AFY0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAO36084.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_220_41
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43403..43942)
DNA (540bp) protein (180aa)
Class I peptide chain release factor n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6C3_NITMU
class I peptide chain release factor; K15034 ribosome-associated protein
Class I peptide chain release factor {ECO:0000313|EMBL:ABB75698.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_500_p_scaffold_220_42
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43950..44834)
DNA (885bp) protein (295aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6C4_NITMU rbh
NAD-dependent dehydratase {ECO:0000313|EMBL:KIO49292.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
NAD-dependent epimerase/dehydratase rbh
SCNpilot_expt_500_p_scaffold_220_43
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44922..45845)
DNA (924bp) protein (308aa)
dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJR8_9PROT rbh
dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL {ECO:0000313|EMBL:CCU63676.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
glycosyl transferase family 2 rbh
SCNpilot_expt_500_p_scaffold_220_44
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46038..46595)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GHB3_NITSI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ01364.1}; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
SCNpilot_expt_500_p_scaffold_220_45
Methylococcaceae bacterium Sn10-6, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47036..47623)
DNA (588bp) protein (196aa)
D,D-heptose 1,7-bisphosphate phosphatase {ECO:0000256|PIRNR:PIRNR004682}; EC=3.1.3.- {ECO:0000256|PIRNR:PIRNR004682};; TaxID=1632867 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae.;" source="Methylococcaceae bacterium Sn10-6.;"
D,D-heptose 1,7-bisphosphate phosphatase; K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D,D-heptose 1,7-bisphosphate phosphatase n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z2M4_DESAT
SCNpilot_expt_500_p_scaffold_220_46
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47620..48312)
DNA (693bp) protein (231aa)
nucleotidyl transferase; K15669 D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase [EC:2.7.7.71]
Nucleotidyl transferase n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AJM4_NITEC
Dehydrogenase {ECO:0000313|EMBL:KHD20809.1}; TaxID=159450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sacchari.;"
SCNpilot_expt_500_p_scaffold_220_47
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48312..48908)
DNA (597bp) protein (199aa)
Phosphoheptose isomerase {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089187}; EC=5.3.1.28 {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089180};; Sedoheptulose 7-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00067}; TaxID=159450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sacchari.;"
gmhA; phosphoheptose isomerase (EC:5.3.1.28)
Phosphoheptose isomerase n=3 Tax=Burkholderia pseudomallei RepID=S5PBK4_BURPE
SCNpilot_expt_500_p_scaffold_220_48
R_Proteobacteria_53_8, Proteobacteria, Bacteria

Not on your lists

comp(48896..49945)
DNA (1050bp) protein (350aa)
GHMP kinase; K07031 D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168] rbh
Putative kinase, galactokinase/mevalonate kinase n=1 Tax=Pseudomonas sp. GM41(2012) RepID=J2RXB3_9PSED rbh
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
SCNpilot_expt_500_p_scaffold_220_49
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49942..51237)
DNA (1296bp) protein (432aa)
glycosyl transferase family protein n=1 Tax=Acetobacter aceti RepID=UPI000225FECD
Glycosyl transferase {ECO:0000313|EMBL:KDP87526.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
group 1 glycosyl transferase
SCNpilot_expt_500_p_scaffold_220_50
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51373..54600)
DNA (3228bp) protein (1076aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NS00_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS31224.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
family 2 glycosyl transferase
SCNpilot_expt_500_p_scaffold_220_51
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55356..56702)
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TNS1_MESCW rbh
Uncharacterized protein {ECO:0000313|EMBL:KFB74471.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
hypothetical protein rbh
SCNpilot_expt_500_p_scaffold_220_52
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56699..58861)
DNA (2163bp) protein (721aa)
macrocin-O-methyltransferase; K05303 O-methyltransferase [EC:2.1.1.-]
Macrocin-O-methyltransferase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I1R4_RHOVT
Macrocin-O-methyltransferase {ECO:0000313|EMBL:KAI95166.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
SCNpilot_expt_500_p_scaffold_220_53
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58936..59733)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5C4D0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ESS71613.1}; TaxID=1116472 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloglobulus.;" source="Methyloglobulus morosus KoM1.;"
SCNpilot_expt_500_p_scaffold_220_54
unknown

Not on your lists

comp(60157..60441)
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_220_55
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60935..61690)
DNA (756bp) protein (252aa)
Polysaccharide ABC transporter, ATP-binding protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DWM5_9PROT rbh
Polysaccharide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CCU63665.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
ABC transporter-like protein; K09691 lipopolysaccharide transport system ATP-binding protein rbh
SCNpilot_expt_500_p_scaffold_220_56
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61695..62477)
DNA (783bp) protein (261aa)
O-antigen export system permease protein RfbD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DL36_9PROT rbh
O-antigen export system permease protein RfbD {ECO:0000313|EMBL:CCU63664.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
putative O-antigen export system permease protein rfbD rbh
SCNpilot_expt_500_p_scaffold_220_57
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63099..63293
DNA (195bp) protein (65aa)
BFD domain protein (2Fe-2S)-binding domain protein n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GKA5_NITSI
(2Fe-2S)-binding protein {ECO:0000313|EMBL:AKH37118.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
BFD domain-containing protein (2Fe-2S)-binding domain-containing protein; K02192 bacterioferritin-associated ferredoxin
SCNpilot_expt_500_p_scaffold_220_58
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63346..64329
DNA (984bp) protein (328aa)
ferroxidase (EC:1.16.3.1) rbh
Multicopper oxidase pseudogene n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLM3_9PROT rbh
Copper oxidase {ECO:0000313|EMBL:KIO49283.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_p_scaffold_220_59
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64366..65013
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKW6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63574.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_220_60
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65010..65723
DNA (714bp) protein (238aa)
Probable transmembrane protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DW77_9PROT rbh
Peptidase {ECO:0000313|EMBL:KIO49281.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
PepSY-associated TM helix-containing protein; K09939 hypothetical protein rbh
Displaying items 31-60 of 104 in total

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