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SCNpilot_expt_500_p_scaffold_6815_5

Organism: SCNPILOT_EXPT_1000_BF_Afipia_63_13

partial RP 36 / 55 MC: 1 BSCG 36 / 51 MC: 4 ASCG 10 / 38
Location: comp(3333..4223)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoH n=2 Tax=Oligotropha carboxidovorans RepID=B6JIL5_OLICO similarity UNIREF
DB: UNIREF100
  • Identity: 94.9
  • Coverage: 294.0
  • Bit_score: 561
  • Evalue 7.20e-157
  • rbh
rpoH; RNA polymerase sigma-32 factor RpoH; K03089 RNA polymerase sigma-32 factor similarity KEGG
DB: KEGG
  • Identity: 94.9
  • Coverage: 294.0
  • Bit_score: 561
  • Evalue 2.30e-157
  • rbh
RNA polymerase sigma-32 factor RpoH {ECO:0000313|EMBL:AEI05678.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.9
  • Coverage: 294.0
  • Bit_score: 561
  • Evalue 1.00e-156

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Taxonomy

Oligotropha carboxidovorans → Oligotropha → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 891
ATGGCCCGTGCAGCCACTTTGCCGATTCTCAGCGGAGAATCCGGCCTGTCCCATTATCTCGCGGAAATCCGCAAGTTTCCGATGCTGGAACCGCAGGAGGAGTACATGCTCGCCAAACGCTGGCGCGAGCATGACGACCGGGACGCGGCGCATAAACTCGTGACCAGCCATCTGCGGCTCGTGGCCAAAATCGCCATGGGCTATCGCGGCTATGGCCTGCCGATTTCCGAAGTGGTGTCGGAAGGCAATGTCGGCCTGATGCAGGCAGTCAAGCGTTTCGAACCCGAGAAGGGTTTCCGTCTCGCAACCTATGCGATGTGGTGGATCAAGGCCTCGATCCAGGAATACATCCTGCGCTCGTGGTCGCTGGTGAAGATGGGCACCACCGCGAACCAGAAGAAGCTGTTCTTTAACCTGCGCAAGGCCAAGAGCAAGATTTCGGCGCTGGAAGACGGCGACATGCGGGACGATCAGGTCAAGCTGATCGCCAAGCGCCTTGGCGTGACCGAGCGCGACGTGATCGACATGAACCGCCGCCTCGGTGGCGACGCTTCGCTCAACGCGCCGATCCGCGACGATGGCGAACCCGGCGAATGGCAGGACTGGCTGGTCGATACTGCGCCCAACCAGGAAACCCTCATGGCGGACAGCGAGGAATATGATCACCGCCGCAACGCGCTGACCGGCGCGATGGGCGTGCTCAATCCGCGCGAGCGCCGCATCTTCGAGGCGCGCCGCCTCGCCGATGATCCGATCACGCTGGAAGACCTCGCCGCCGAATTCGGCGTATCGCGCGAACGCGTGCGACAGATCGAGGTCCGCGCCTTCGAAAAGGTGCAGTCGGCGGTGAAAAACGCGGTGGCCCGGCAGGAGGCCGTCGCCGCGGCGTAA
PROTEIN sequence
Length: 297
MARAATLPILSGESGLSHYLAEIRKFPMLEPQEEYMLAKRWREHDDRDAAHKLVTSHLRLVAKIAMGYRGYGLPISEVVSEGNVGLMQAVKRFEPEKGFRLATYAMWWIKASIQEYILRSWSLVKMGTTANQKKLFFNLRKAKSKISALEDGDMRDDQVKLIAKRLGVTERDVIDMNRRLGGDASLNAPIRDDGEPGEWQDWLVDTAPNQETLMADSEEYDHRRNALTGAMGVLNPRERRIFEARRLADDPITLEDLAAEFGVSRERVRQIEVRAFEKVQSAVKNAVARQEAVAAA*