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SCNpilot_expt_500_p_scaffold_6815_6

Organism: SCNPILOT_EXPT_1000_BF_Afipia_63_13

partial RP 36 / 55 MC: 1 BSCG 36 / 51 MC: 4 ASCG 10 / 38
Location: comp(4443..5375)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.2
  • Coverage: 310.0
  • Bit_score: 526
  • Evalue 2.20e-146
RluA family pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] similarity KEGG
DB: KEGG
  • Identity: 79.4
  • Coverage: 310.0
  • Bit_score: 505
  • Evalue 1.20e-140
  • rbh
Pseudouridine synthase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7S8_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 83.2
  • Coverage: 310.0
  • Bit_score: 526
  • Evalue 1.60e-146
  • rbh

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Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 933
ATGCTGGCGGCCCGTTGCACCGACCTGTCGCGCACGCGCCTCAAAGCGCTGATCCTCGATGGCCGCGTCACCGTCAATGCCGCGCCGGTTCGCGACCCCGCTTATCACGTCGGCGTCGGCGACACGATCACAATCGACGTGCCGCCCGCGGTGCCGGCCGAGCCCGCCGGCGAGAACATCCCGCTCGATATCGTCTATGAAGACGACGACATCATCGTGCTGAACAAGCCGAAAGGGCTTGTCGTGCACCCCGCCGCCGGACACGAAACCGGCACGCTGGTGAATGCGCTGATCGCCCATTGCGGCGCCAGCCTGTCAGGCATCGGCGGCGTCAAGCGGCCCGGCATCGTGCATCGGCTCGACAAGGACACCACCGGTCTGATGGTGGTGGCCAAGAACGACCGCGCCCACCAGTCGCTATCGGCGCAGTTCGCCGATCATGGCCGCACCGGCGAGATGCGTCGCGGCTACCTGGCCTTTGTCTGGGGGGCGCCGGACCGGCCGCGCGGCACCATCGACCAGCCGATCGACCGCCATCCGTTCGCCCGCGAGAAAATGGCGGTACGCACTACCGGCCGCTTCGCCGTCACCCATTGGGAGACGCAGCAAAGCTTCGCCGGCAGAGACGGCAAGCCGGTCGCCAGCCTGCTCGCCTGCCAGCTCGAGACCGGACGGACACATCAGATCCGCGTCCACCTCGCTCATCTCGGGCACCCCCTCCTCGGCGACGATGTCTATGGCTCGGGCTTCAAGACCAAGGCGCGGCAGTTGCCGGACGAGGCAAGAAACACGCTTGCGGCTCTGGGCAGGCAGGCCCTGCATGCCTATCTCCTTGTTCTGGAGCACCCGGCCACCGGAGAAATCATGCAGTGGCAGACCGGGCTGCCGGAGGATTTGCTTCTCCTCGAAGCCGCGCTCGGTAGCACAGACTAA
PROTEIN sequence
Length: 311
MLAARCTDLSRTRLKALILDGRVTVNAAPVRDPAYHVGVGDTITIDVPPAVPAEPAGENIPLDIVYEDDDIIVLNKPKGLVVHPAAGHETGTLVNALIAHCGASLSGIGGVKRPGIVHRLDKDTTGLMVVAKNDRAHQSLSAQFADHGRTGEMRRGYLAFVWGAPDRPRGTIDQPIDRHPFAREKMAVRTTGRFAVTHWETQQSFAGRDGKPVASLLACQLETGRTHQIRVHLAHLGHPLLGDDVYGSGFKTKARQLPDEARNTLAALGRQALHAYLLVLEHPATGEIMQWQTGLPEDLLLLEAALGSTD*