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SCNPILOT_EXPT_1000_BF_Burkholderiales_68_66

SCNPILOT_EXPT_500_P_Burkholderiales_70_8
In projects: SCNPILOT_EXPT_500_P

Consensus taxonomy: Burkholderiales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 8.09 Longest contig: 18.20 Kbp Bin length: 3.44 Mbp GC content: 69.82 %
Contigs count: 1169 Features count: 4201 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 29 / 55 MC: 3 BSCG 30 / 51 MC: 3 ASCG 9 / 38 MC: 2
Displaying items 851-900 of 1169 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_p_scaffold_30406
Order: Burkholderiales (50%)
4 1759 bp 70.10 8.24 90.56
SCNpilot_expt_500_p_scaffold_13546
Class: Betaproteobacteria (83.33%)
6 6967 bp 69.31 8.65 90.56
SCNpilot_expt_500_p_scaffold_31287
Species: R_Betaproteobacteria_63_19 (50%)
2 1713 bp 72.80 9.05 90.54
SCNpilot_expt_500_p_scaffold_12826
Phylum: Proteobacteria (60%)
5 3683 bp 70.00 9.23 90.50
SCNpilot_expt_500_p_scaffold_15839
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 3110 bp 68.75 7.88 90.48
SCNpilot_expt_500_p_scaffold_28215
Species: Acidovorax sp. CF316 (50%)
2 1880 bp 68.62 9.18 90.48
SCNpilot_expt_500_p_scaffold_22359
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated (50%)
2 2325 bp 73.59 7.20 90.45
SCNpilot_expt_500_p_scaffold_28003
Order: Burkholderiales (66.67%)
3 1894 bp 64.57 9.37 90.44
SCNpilot_expt_500_p_scaffold_53867
Species: Lautropia mirabilis (50%)
2 1055 bp 70.90 6.87 90.43
SCNpilot_expt_500_p_scaffold_10682
Species: Acidovorax avenae (50%)
4 5091 bp 68.06 8.50 90.39
SCNpilot_expt_500_p_scaffold_9633
Species: RBG_16_Betaproteobacteria_64_18_curated (66.67%)
6 4574 bp 62.51 7.65 90.38
SCNpilot_expt_500_p_scaffold_34664
Species: Ralstonia pickettii (66.67%)
3 1557 bp 67.69 9.31 90.37
SCNpilot_expt_500_p_scaffold_25093
Species: Cupriavidus sp. SK-3 (50%)
2 2092 bp 68.31 7.41 90.34
SCNpilot_expt_500_p_scaffold_12030
Class: Betaproteobacteria (66.67%)
6 4341 bp 68.46 9.79 90.32
SCNpilot_expt_500_p_scaffold_15402
Class: Betaproteobacteria (60%)
5 3182 bp 70.36 9.04 90.32
SCNpilot_expt_500_p_scaffold_50010
Species: Thauera sp. SWB20 (50%)
2 1124 bp 69.22 6.23 90.21
SCNpilot_expt_500_p_scaffold_13056
Order: Burkholderiales (60%)
5 3629 bp 71.09 8.68 90.19
SCNpilot_expt_500_p_scaffold_6796
Order: Burkholderiales (57.14%)
7 5878 bp 68.19 9.40 90.18
SCNpilot_expt_500_p_scaffold_45533
Species: Thiomonas sp. CB2 (50%)
2 1218 bp 68.64 8.62 90.15
SCNpilot_expt_500_p_scaffold_25131
Order: Burkholderiales (50%)
4 2090 bp 70.48 6.46 90.14
SCNpilot_expt_500_p_scaffold_16849
Class: Betaproteobacteria (100%)
3 2959 bp 70.67 6.93 90.13
SCNpilot_expt_500_p_scaffold_18588
Class: Betaproteobacteria (66.67%)
3 4268 bp 74.65 6.74 90.11
SCNpilot_expt_500_p_scaffold_16309
Order: Burkholderiales (66.67%)
3 3040 bp 73.32 8.06 90.10
SCNpilot_expt_500_p_scaffold_15540
Class: Betaproteobacteria (75%)
4 3161 bp 65.52 7.67 90.07
SCNpilot_expt_500_p_scaffold_12596
Order: Burkholderiales (60%)
5 3738 bp 67.63 8.36 90.05
SCNpilot_expt_500_p_scaffold_36473
Species: Candidatus Accumulibacter sp. SK-12 (50%)
2 1486 bp 69.85 4.04 90.04
SCNpilot_expt_500_p_scaffold_8242
Order: Burkholderiales (60%)
5 5112 bp 71.03 7.09 90.02
SCNpilot_expt_500_p_scaffold_33607
Species: R_Burkholderiales_69_20 (50%)
2 1603 bp 72.86 5.77 90.02
SCNpilot_expt_500_p_scaffold_36182
Species: Lautropia mirabilis (50%)
2 1497 bp 69.54 7.52 89.98
SCNpilot_expt_500_p_scaffold_3200
Order: Burkholderiales (53.85%)
13 9891 bp 67.25 8.19 89.96
SCNpilot_expt_500_p_scaffold_16937
Species: Lautropia mirabilis (50%)
4 2946 bp 71.32 7.38 89.92
SCNpilot_expt_500_p_scaffold_20457
Order: Burkholderiales (60%)
5 4602 bp 72.14 10.21 89.90
SCNpilot_expt_500_p_scaffold_41337
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated (100%)
1 1325 bp 70.49 6.23 89.89
SCNpilot_expt_500_p_scaffold_10912
Class: Betaproteobacteria (75%)
4 4466 bp 71.94 10.24 89.81
SCNpilot_expt_500_p_scaffold_41056 3 1333 bp 75.32 6.19 89.80
SCNpilot_expt_500_p_scaffold_21996
Species: R_Burkholderiales_63_240 (66.67%)
3 2356 bp 66.34 6.37 89.77
SCNpilot_expt_500_p_scaffold_38988
Species: Variovorax paradoxus (50%)
2 1397 bp 72.58 7.52 89.76
SCNpilot_expt_500_p_scaffold_15399
Order: Burkholderiales (80%)
5 3182 bp 68.51 5.89 89.75
SCNpilot_expt_500_p_scaffold_27845
Species: Methylibium sp. T29-B (50%)
2 1903 bp 71.57 8.15 89.70
SCNpilot_expt_500_p_scaffold_15401
Order: Burkholderiales (100%)
5 3182 bp 75.17 9.27 89.66
SCNpilot_expt_500_p_scaffold_6963
Species: Aromatoleum aromaticum (50%)
4 5792 bp 70.34 7.99 89.66
SCNpilot_expt_500_p_scaffold_5004
Order: Burkholderiales (75%)
8 7282 bp 69.62 8.96 89.65
SCNpilot_expt_500_p_scaffold_9685
Order: Burkholderiales (66.67%)
6 4552 bp 71.20 8.84 89.63
SCNpilot_expt_500_p_scaffold_37944
Species: Bordetella parapertussis (50%)
2 1433 bp 74.74 10.29 89.60
SCNpilot_expt_500_p_scaffold_25232
Species: Thauera linaloolentis (50%)
2 2083 bp 68.51 9.00 89.58
SCNpilot_expt_500_p_scaffold_33218
Species: Pandoraea sp. SD6-2 (66.67%)
3 1621 bp 72.55 9.56 89.57
SCNpilot_expt_500_p_scaffold_34966
Species: CSP1_5_NC10 (50%)
2 1544 bp 72.60 8.42 89.57
SCNpilot_expt_500_p_scaffold_20434
Phylum: Proteobacteria (100%)
3 2516 bp 69.99 9.04 89.55
SCNpilot_expt_500_p_scaffold_3808
Class: Betaproteobacteria (69.23%)
13 8812 bp 71.44 8.57 89.54
SCNpilot_expt_500_p_scaffold_9158
Order: Burkholderiales (60%)
5 4738 bp 69.46 6.86 89.53
Displaying items 851-900 of 1169 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.