ggKbase | organisms

Consensus taxonomy: Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 2.31 Longest contig: 2.50 Kbp Bin length: 758.00 Kbp GC content: 68.12 %

Contigs count: 596 Features count: 1082 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 2 / 55 BSCG 3 / 51 ASCG 1 / 38

Displaying items 101-150 of 596 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
SCNpilot_expt_500_p_scaffold_50278 Species: Luteibacter yeojuensis (50%)	2	1119 bp	64.88	4.47	82.57
SCNpilot_expt_500_p_scaffold_44951 Species: Sorangium cellulosum (100%)	2	1231 bp	70.19	2.03	99.43
SCNpilot_expt_500_p_scaffold_52839 Species: Myxococcus xanthus (50%)	2	1072 bp	69.87	3.73	101.87
SCNpilot_expt_500_p_scaffold_39066 Species: Myxococcus fulvus (50%)	2	1394 bp	70.66	3.23	94.48
SCNpilot_expt_500_p_scaffold_52073 Species: Hyalangium minutum (50%)	2	1086 bp	66.85	2.76	100.28
SCNpilot_expt_500_p_scaffold_42674 Species: Deinococcus swuensis (50%)	2	1289 bp	69.90	1.55	97.05
SCNpilot_expt_500_p_scaffold_43559 Species: Sorangium cellulosum (100%)	2	1266 bp	68.96	2.37	91.47
SCNpilot_expt_500_p_scaffold_32107 Species: Chloroflexus aggregans (50%)	2	1672 bp	66.99	1.20	100.12
SCNpilot_expt_500_p_scaffold_32875	2	1636 bp	66.44	2.44	100.12
SCNpilot_expt_500_p_scaffold_51538 Species: Nocardia seriolae (50%)	2	1096 bp	68.80	2.74	99.63
SCNpilot_expt_500_p_scaffold_53899	2	1055 bp	70.05	1.90	88.15
SCNpilot_expt_500_p_scaffold_51797	2	1091 bp	63.06	2.75	70.67
SCNpilot_expt_500_p_scaffold_54317 Species: Sorangium cellulosum (50%)	2	1048 bp	67.37	2.39	100.19
SCNpilot_expt_500_p_scaffold_34471 Species: Anaeromyxobacter sp. PSR-1 (50%)	2	1566 bp	63.47	2.55	78.54
SCNpilot_expt_500_p_scaffold_56734 Species: CSP1_3_Armatimonadetes (50%)	2	1010 bp	64.95	2.97	95.05
SCNpilot_expt_500_p_scaffold_56990 Species: Anabaena variabilis (50%)	2	1006 bp	69.48	3.48	80.52
SCNpilot_expt_500_p_scaffold_49014 Species: Chondromyces apiculatus (50%)	2	1143 bp	68.50	2.62	100.00
SCNpilot_expt_500_p_scaffold_33655 Species: Chondromyces apiculatus (50%)	2	1601 bp	68.21	1.25	79.08
SCNpilot_expt_500_p_scaffold_41240 Species: Mycobacterium mageritense (50%)	2	1328 bp	65.81	3.01	90.59
SCNpilot_expt_500_p_scaffold_45624 Species: Myxococcus stipitatus (50%)	2	1216 bp	68.17	1.23	62.91
SCNpilot_expt_500_p_scaffold_41241	2	1328 bp	69.58	2.64	97.14
SCNpilot_expt_500_p_scaffold_50809 Species: Sorangium cellulosum (50%)	2	1110 bp	69.01	1.35	100.27
SCNpilot_expt_500_p_scaffold_43826 Species: Sandaracinus amylolyticus (50%)	2	1259 bp	68.55	2.78	91.98
SCNpilot_expt_500_p_scaffold_49018 Species: Plesiocystis pacifica (50%)	2	1143 bp	68.77	4.37	94.75
SCNpilot_expt_500_p_scaffold_53906	2	1055 bp	69.10	1.90	100.10
SCNpilot_expt_500_p_scaffold_34733 Species: Sorangium cellulosum (100%)	2	1554 bp	71.62	1.29	92.66
SCNpilot_expt_500_p_scaffold_55412 Species: Chloracidobacterium thermophilum (50%)	2	1030 bp	71.94	1.94	89.42
SCNpilot_expt_500_p_scaffold_34222 Species: Haliangium ochraceum (50%)	2	1576 bp	64.91	3.49	100.13
SCNpilot_expt_500_p_scaffold_43573	2	1265 bp	70.04	2.77	99.84
SCNpilot_expt_500_p_scaffold_43318 Species: Sorangium cellulosum (50%)	2	1272 bp	65.33	1.57	83.49
SCNpilot_expt_500_p_scaffold_48878 Species: Sorangium cellulosum (50%)	2	1146 bp	69.63	3.05	57.85
SCNpilot_expt_500_p_scaffold_55670 Species: Enhygromyxa salina (50%)	2	1026 bp	67.25	2.44	94.15
SCNpilot_expt_500_p_scaffold_45374 Species: Sorangium cellulosum (100%)	2	1221 bp	67.16	2.05	82.31
SCNpilot_expt_500_p_scaffold_40271 Species: Hyalangium minutum (50%)	2	1356 bp	67.92	2.95	98.01
SCNpilot_expt_500_p_scaffold_53911	2	1055 bp	64.74	1.90	90.14
SCNpilot_expt_500_p_scaffold_55928 Species: CG_Delta_07 (50%)	2	1022 bp	67.12	2.94	85.42
SCNpilot_expt_500_p_scaffold_34226 Species: Sandaracinus amylolyticus (50%)	2	1576 bp	69.42	3.17	64.34
SCNpilot_expt_500_p_scaffold_44978 Species: Haliangium ochraceum (50%)	2	1231 bp	71.24	1.83	100.16
SCNpilot_expt_500_p_scaffold_55419 Species: Cystobacter fuscus (50%)	2	1030 bp	68.64	1.94	73.40
SCNpilot_expt_500_p_scaffold_44723 Species: Stigmatella aurantiaca (50%)	2	1237 bp	66.29	3.23	97.49
SCNpilot_expt_500_p_scaffold_40276 Species: Caulobacter vibrioides (50%)	2	1356 bp	72.64	2.58	100.22
SCNpilot_expt_500_p_scaffold_40788 Species: Chondromyces apiculatus (50%)	2	1341 bp	66.67	1.12	71.36
SCNpilot_expt_500_p_scaffold_54588 Species: Haliangium ochraceum (50%)	2	1043 bp	69.32	1.00	86.29
SCNpilot_expt_500_p_scaffold_45125 Species: Sorangium cellulosum (50%)	2	1227 bp	69.93	2.04	92.18
SCNpilot_expt_500_p_scaffold_34999 Species: Sorangium cellulosum (50%)	2	1543 bp	71.55	1.13	100.13
SCNpilot_expt_500_p_scaffold_35831 Species: Cystobacter violaceus (100%)	2	1511 bp	67.44	1.99	94.71
SCNpilot_expt_500_p_scaffold_42192	2	1302 bp	67.13	3.07	52.07
SCNpilot_expt_500_p_scaffold_49288 Species: Meiothermus silvanus (50%)	2	1138 bp	67.84	1.00	85.41
SCNpilot_expt_500_p_scaffold_52617 Species: Delftia acidovorans (50%)	2	1076 bp	68.22	3.25	95.35
SCNpilot_expt_500_p_scaffold_48378 Species: Stenotrophomonas maltophilia (50%)	2	1157 bp	63.09	3.03	81.68

Displaying items 101-150 of 596 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNPILOT_EXPT_750_BF_Myxococcales_68_20) and add all its contigs / scaffolds to the organism you choose below

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Other organism

SCNPILOT_EXPT_750_BF_Myxococcales_68_20

SCNPILOT_EXPT_500_P_Proteobacteria_68_2

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

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