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SCNpilot_expt_500_p_scaffold_724_curated

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_p_scaffold_724_curated_1
unknown

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1..1215
DNA (1215bp) protein (405aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_724_curated_2
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1293..1715)
DNA (423bp) protein (141aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12428.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_724_curated_3
Wolbachia endosymbiont of Brugia malayi, Wolbachia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2121..2744
DNA (624bp) protein (208aa)
Protein containing GNAT family acetyltransferase domain n=1 Tax=Wolbachia sp. subsp. Brugia malayi (strain TRS) RepID=Q5GS38_WOLTR
acetyltransferase domain-containing protein
Protein containing GNAT family acetyltransferase domain {ECO:0000313|EMBL:AAW71186.1}; TaxID=292805 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Wolbachieae; Wolbachia.;" source="Wolbachia sp. subsp. Brugia malayi (strain TRS).;"
SCNpilot_expt_500_p_scaffold_724_curated_4
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3777..5558)
DNA (1782bp) protein (594aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12424.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_724_curated_5
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5699..7030)
DNA (1332bp) protein (444aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12423.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_724_curated_6
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7220..8155
DNA (936bp) protein (312aa)
Putative uncharacterized protein n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6M9Y5_PARUW
Uncharacterized protein {ECO:0000313|EMBL:AIL12422.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_724_curated_7
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8157..9281
DNA (1125bp) protein (375aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-]
thiouridylase n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B93F
SCNpilot_expt_500_p_scaffold_724_curated_8
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9284..9745
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JQT5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL12420.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein; K09005 hypothetical protein
SCNpilot_expt_500_p_scaffold_724_curated_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9720..10556
DNA (837bp) protein (279aa)
dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (EC:2.3.1.117); K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Gluconobacter oxydans (strain 621H) RepID=DAPD_GLUOX rbh
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase {ECO:0000313|EMBL:AIL12419.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_724_curated_10
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10553..11689
DNA (1137bp) protein (379aa)
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
dapE; succinyl-diaminopimelate desuccinylase (EC:3.5.1.18); K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
Succinyl-diaminopimelate desuccinylase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=DAPE_RHOCS rbh
SCNpilot_expt_500_p_scaffold_724_curated_11
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11693..12385)
DNA (693bp) protein (231aa)
Multiple antibiotic resistance (MarC)-related protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GC36_GEOUR
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
multiple antibiotic resistance (MarC)-like protein; K05595 multiple antibiotic resistance protein
SCNpilot_expt_500_p_scaffold_724_curated_12
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12473..12982)
DNA (510bp) protein (170aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12417.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_724_curated_13
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13115..13666
DNA (552bp) protein (184aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12416.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_724_curated_14
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13747..15957
DNA (2211bp) protein (737aa)
Uncharacterized protein {ECO:0000313|EMBL:AIL12415.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_724_curated_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16166..16678)
DNA (513bp) protein (171aa)
30S ribosomal protein S9 n=1 Tax=uncultured bacterium RepID=K2DTU3_9BACT
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
SCNpilot_expt_500_p_scaffold_724_curated_16
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16685..17146)
DNA (462bp) protein (154aa)
50S ribosomal protein L13 n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=RL13_RHOCS
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
SCNpilot_expt_500_p_scaffold_724_curated_17
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17276..18232)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2J5Z5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL12411.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein; K07276 hypothetical protein
SCNpilot_expt_500_p_scaffold_724_curated_18
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18242..18718)
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NR70_AZOS1
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
greA; transcription elongation factor; K03624 transcription elongation factor GreA
SCNpilot_expt_500_p_scaffold_724_curated_19
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19046..21838
DNA (2793bp) protein (931aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Isoleucine--tRNA ligase n=1 Tax=uncultured bacterium RepID=K2FGY8_9BACT
ileS; isoleucyl-tRNA synthetase
SCNpilot_expt_500_p_scaffold_724_curated_20
Thalassospira sp. HJ, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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21838..22335
DNA (498bp) protein (166aa)
lspA; lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Lipoprotein signal peptidase; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1616823 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira sp. HJ.;"
peptidase A8 n=1 Tax=Thalassospira lucentensis RepID=UPI0003B4F1A1
SCNpilot_expt_500_p_scaffold_724_curated_21
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22322..22813
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00035D9E19
Uncharacterized protein {ECO:0000313|EMBL:AIL12408.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_500_p_scaffold_724_curated_22
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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22830..24164
DNA (1335bp) protein (445aa)
peptidase, M16 family (EC:3.4.24.-)
Putative Zn-dependent protease n=1 Tax=Oceanibaculum indicum P24 RepID=K2IJB8_9PROT
Putative Zn-dependent protease {ECO:0000313|EMBL:EKE70201.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
SCNpilot_expt_500_p_scaffold_724_curated_23
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24182..25498
DNA (1317bp) protein (439aa)
Peptidase M16 domain protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I831_RHOVT
Uncharacterized protein {ECO:0000313|EMBL:AIL12407.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
peptidase M16 domain-containing protein
SCNpilot_expt_500_p_scaffold_724_curated_24
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25488..26762
DNA (1275bp) protein (425aa)
Glucose-6-phosphate isomerase {ECO:0000256|RuleBase:RU000612, ECO:0000256|SAAS:SAAS00031329}; EC=5.3.1.9 {ECO:0000256|RuleBase:RU000612, ECO:0000256|SAAS:SAAS00031329};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
glucose-6-phosphate isomerase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B64F65
phosphoglucose isomerase family protein
SCNpilot_expt_500_p_scaffold_724_curated_25
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26759..28579
DNA (1821bp) protein (607aa)
DNA mismatch repair protein MutL n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GLI0_9PROT
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
mutL; DNA mismatch repair protein MutL; K03572 DNA mismatch repair protein MutL
SCNpilot_expt_500_p_scaffold_724_curated_26
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29078..30355)
DNA (1278bp) protein (426aa)
tRNA and rRNA cytosine-C5-methylase; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4U229_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AIL12404.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
SCNpilot_expt_500_p_scaffold_724_curated_27
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30352..31032)
DNA (681bp) protein (227aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
Ribosomal RNA large subunit methyltransferase E n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4U233_9PROT
ftsJ; ribosomal RNA large subunit (23S) methyltransferase
SCNpilot_expt_500_p_scaffold_724_curated_28
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(31032..32030)
DNA (999bp) protein (333aa)
exopolyphosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
Exopolyphosphatase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HBX3_9PROT
Exopolyphosphatase {ECO:0000313|EMBL:EKV28048.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
SCNpilot_expt_500_p_scaffold_724_curated_29
unknown

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comp(32200..32388)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_500_p_scaffold_724_curated_30
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32438..33778)
DNA (1341bp) protein (447aa)
Permease of the major facilitator superfamily,AmpG-like n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AMH8_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:AIL12401.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
permease of the major facilitator superfamily,AmpG-like
Displaying 30 items

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