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scnpilot_expt_750_bf_scaffold_929

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_929_1

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2..139
DNA (138bp) protein (46aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu (EF-Tu) (P-43) n=1 Tax=mine drainage metagenome RepID=E6PK11_9ZZZZ
Elongation factor Tu (EF-Tu) (P-43) {ECO:0000313|EMBL:CBH95262.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
scnpilot_expt_750_bf_scaffold_929_trna_1
unknown

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150..229
DNA (80bp)
transferRNA
scnpilot_expt_750_bf_scaffold_929_2
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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305..688
DNA (384bp) protein (128aa)
Protein translocase subunit SecE n=1 Tax=Acidovorax sp. KKS102 RepID=K0HYR6_9BURK
secE; preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovora
scnpilot_expt_750_bf_scaffold_929_3
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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688..1275
DNA (588bp) protein (196aa)
Transcription termination/antitermination protein NusG n=1 Tax=Acidovorax sp. NO-1 RepID=H0C452_9BURK
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderi
NusG antitermination factor
scnpilot_expt_750_bf_scaffold_929_4
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1402..1833
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Comamonas sp. B-9 RepID=UPI000395637F
rplK; 50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000255|HAMAP-Rule:MF_00736}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (
scnpilot_expt_750_bf_scaffold_929_5
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1834..2529
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y0U3_RAMTT
rplA; 50S ribosomal protein l1; K02863 large subunit ribosomal protein L1 Tax=GWA2_Curvibacter_64_110_curated
rplA; 50S ribosomal protein L1
scnpilot_expt_750_bf_scaffold_929_6
unknown

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2651..2749
DNA (99bp) protein (33aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_929_7
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2761..3198
DNA (438bp) protein (146aa)
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 id=12551358 bin=BDI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
rplJ; 50S ribosomal protein L10
scnpilot_expt_750_bf_scaffold_929_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3251..3631
DNA (381bp) protein (127aa)
50S ribosomal protein L7/L12 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000371E7A2
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax s
rplL; 50S ribosomal protein L7/L12
scnpilot_expt_750_bf_scaffold_929_9
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3909..5741
DNA (1833bp) protein (611aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q8L7_ACIAP
DNA-directed RNA polymerase subunit beta
scnpilot_expt_750_bf_scaffold_929_10
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5767..7956
DNA (2190bp) protein (730aa)
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase su
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Acidovorax sp. (strain JS42) RepID=RPOB_ACISJ
scnpilot_expt_750_bf_scaffold_929_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8088..12317
DNA (4230bp) protein (1410aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' n=2 Tax=Alicycliphilus denitrificans RepID=E8TVM6_ALIDB
DNA-directed RNA polymerase subunit beta'
scnpilot_expt_750_bf_scaffold_929_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12396..12941
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003690DA3
Uncharacterized protein {ECO:0000313|EMBL:GAD22592.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.
hypothetical protein
scnpilot_expt_750_bf_scaffold_929_13
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12938..14287
DNA (1350bp) protein (450aa)
Sun protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCM6_ACISJ
sun protein
Sun protein {ECO:0000313|EMBL:ABM44001.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp.
scnpilot_expt_750_bf_scaffold_929_14
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14259..14936
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCM5_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM44000.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Aci
scnpilot_expt_750_bf_scaffold_929_15
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14933..17230
DNA (2298bp) protein (766aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ac
multi-sensor signal transduction histidine kinase (EC:2.7.3.-)
histidine kinase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037F5E86 rbh
scnpilot_expt_750_bf_scaffold_929_16
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17271..17963
DNA (693bp) protein (231aa)
XRE family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037408FC
Response regulator {ECO:0000313|EMBL:GAD22596.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
Fis family two component transcriptional regulator
scnpilot_expt_750_bf_scaffold_929_trna_2
unknown

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18017..18089
DNA (73bp)
transferRNA
scnpilot_expt_750_bf_scaffold_929_17
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18387..18617)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MH40_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34668.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (str
scnpilot_expt_750_bf_scaffold_929_18
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18691..19686)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MH39_ACIET rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34667.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (str
scnpilot_expt_750_bf_scaffold_929_19
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19690..20925)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MH38_ACIET rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34666.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (str
Displaying 21 items

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