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scnpilot_expt_750_bf_scaffold_2724

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_2724_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2..487
DNA (486bp) protein (162aa)
ABC transporter; K02003 putative ABC transport system ATP-binding protein id=12494785 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
antimicrobial peptide ABC transporter ATPase; K02003 putative ABC transport system ATP-binding protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
ABC transporter
scnpilot_expt_750_bf_scaffold_2724_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

484..1707
DNA (1224bp) protein (408aa)
hypothetical protein; K02004 putative ABC transport system permease protein id=12494784 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein; K02004 putative ABC transport system permease protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_2724_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1788..3557
DNA (1770bp) protein (590aa)
TPR repeat-containing protein id=12494783 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
TPR repeat-containing protein Tax=GWE1_Thiobacillus_62_9_curated
TPR repeat-containing protein
scnpilot_expt_750_bf_scaffold_2724_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3557..4120
DNA (564bp) protein (188aa)
outer membrane lipoprotein LolB; K02494 outer membrane lipoprotein LolB id=12494782 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
outer membrane lipoprotein LolB; K02494 outer membrane lipoprotein LolB Tax=GWE1_Thiobacillus_62_9_curated
outer membrane lipoprotein LolB
scnpilot_expt_750_bf_scaffold_2724_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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4117..5004
DNA (888bp) protein (296aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] id=12494781 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; Short=CMK {ECO:0000255|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000255|HAMAP-Rule:MF_00061};; 4-(cytidine-5'-dipho
scnpilot_expt_750_bf_scaffold_2724_trna_1
unknown

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5026..5097
DNA (72bp)
transferRNA
scnpilot_expt_750_bf_scaffold_2724_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5173..5913
DNA (741bp) protein (247aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] id=12494780 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_750_bf_scaffold_2724_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5862..6047
DNA (186bp) protein (62aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] id=12494780 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
scnpilot_expt_750_bf_scaffold_2724_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6139..6750
DNA (612bp) protein (204aa)
50S ribosomal protein L25/general stress protein Ctc; K02897 large subunit ribosomal protein L25 id=12494779 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
50S ribosomal protein L25
50S ribosomal protein L25 {ECO:0000255|HAMAP-Rule:MF_01334}; General stress protein CTC {ECO:0000255|HAMAP-Rule:MF_01334}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogeno
scnpilot_expt_750_bf_scaffold_2724_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6807..7433
DNA (627bp) protein (209aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] id=12494778 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
peptidyl-tRNA hydrolase (EC:3.1.1.29)
scnpilot_expt_750_bf_scaffold_2724_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7430..8521
DNA (1092bp) protein (364aa)
ychF; GTP-dependent nucleic acid-binding protein EngD; K06942 id=12494777 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
ychF; GTP-dependent nucleic acid-binding protein EngD; K06942 Tax=GWE1_Thiobacillus_62_9_curated
ychF; GTP-dependent nucleic acid-binding protein EngD
scnpilot_expt_750_bf_scaffold_2724_11
unknown

Not on your lists

8654..8782
DNA (129bp) protein (43aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_2724_12
Nitrincola lacisaponensis, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9168..10283
DNA (1116bp) protein (372aa)
Adenosine monophosphate-protein transferase {ECO:0000256|PIRNR:PIRNR038925}; EC=2.7.7.n1 {ECO:0000256|PIRNR:PIRNR038925};; AMPylator {ECO:0000256|PIRNR:PIRNR038925}; TaxID=267850 species="Bacteria; Pr
Fic family protein id=12494776 bin=THIO_HI species=Marinobacter sp. EVN1 genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
cell filamentation protein Fic
scnpilot_expt_750_bf_scaffold_2724_13
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10499..10771
DNA (273bp) protein (91aa)
type III restriction enzyme (EC:3.1.21.5)
Type III restriction enzyme n=1 Tax=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) RepID=Q7WNX2_BORBR
Type III restriction enzyme, res subunit {ECO:0000313|EMBL:KDD50989.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bord
scnpilot_expt_750_bf_scaffold_2724_trna_2
unknown

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11037..11107
DNA (71bp)
transferRNA
scnpilot_expt_750_bf_scaffold_2724_trna_3
unknown

Not on your lists

11145..11216
DNA (72bp)
transferRNA
scnpilot_expt_750_bf_scaffold_2724_14
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11365..11460
DNA (96bp) protein (32aa)
Elongation factor Tu n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=EFTU_CHRVO
tuf; translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria
Displaying 17 items

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