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scnpilot_expt_750_bf_scaffold_1539

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1539_1
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1266)
DNA (1266bp) protein (422aa)
Glutamyl-tRNA amidotransferase {ECO:0000313|EMBL:AKH37010.1}; EC=6.3.5.- {ECO:0000313|EMBL:AKH37010.1};; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomon
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=3 Tax=Bordetella bronchiseptica RepID=K0N3E6_BORBM
gatB; glutamyl-tRNA(GLN) amidotransferase subunit B
scnpilot_expt_750_bf_scaffold_1539_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1527..1676)
DNA (150bp) protein (50aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=GWE1_Thiobacillus_62_9_curated
glutamyl-tRNA amidotransferase subunit A n=1 Tax=Thiobacillus denitrificans RepID=UPI000365314F
scnpilot_expt_750_bf_scaffold_1539_3
RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2335..2490
DNA (156bp) protein (52aa)
Penicillin-binding protein dimerization domain protein n=1 Tax=Bordetella pertussis 2371640 RepID=V8ULN7_BORBO
Uncharacterized protein Tax=RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated
scnpilot_expt_750_bf_scaffold_1539_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2892..3179)
DNA (288bp) protein (96aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C (EC:6.3.5.-); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] id=12494427 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C (EC:6.3.5.-); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RIFOXYA1_FULL_Hydrogenophilal
aspartyl/glutamyl-tRNA amidotransferase subunit C (EC:6.3.5.-)
scnpilot_expt_750_bf_scaffold_1539_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3282..4325
DNA (1044bp) protein (348aa)
rod shape-determining protein MreB n=1 Tax=Thiobacillus thioparus RepID=UPI0003655A13
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rod shape-determining protein MreB
scnpilot_expt_750_bf_scaffold_1539_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4354..5199
DNA (846bp) protein (282aa)
rod shape-determining protein MreC; K03570 rod shape-determining protein MreC id=12494429 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
rod shape-determining protein MreC
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrog
scnpilot_expt_750_bf_scaffold_1539_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5196..5696
DNA (501bp) protein (167aa)
hypothetical protein; K03571 rod shape-determining protein MreD id=12494430 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein; K03571 rod shape-determining protein MreD Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1539_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5704..7596
DNA (1893bp) protein (631aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K05515 penicillin-binding protein 2 id=12494431 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
peptidoglycan glycosyltransferase (EC:2.4.1.129); K05515 penicillin-binding protein 2 Tax=GWE1_Thiobacillus_62_9_curated
peptidoglycan glycosyltransferase (EC:2.4.1.129)
scnpilot_expt_750_bf_scaffold_1539_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7583..8683
DNA (1101bp) protein (367aa)
rod shape-determining protein RodA; K05837 rod shape determining protein RodA id=12494432 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
rod shape-determining protein RodA; K05837 rod shape determining protein RodA Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rod shape-determining protein RodA
scnpilot_expt_750_bf_scaffold_1539_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9024..9422
DNA (399bp) protein (133aa)
rare lipoprotein A; K03642 rare lipoprotein A id=12494433 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rare lipoprotein A; K03642 rare lipoprotein A Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
rare lipoprotein A
scnpilot_expt_750_bf_scaffold_1539_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9436..10482
DNA (1047bp) protein (349aa)
serine-type D-ala-D-ala carboxypeptidase (EC:3.4.16.4); K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] id=12494434 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
serine-type D-ala-D-ala carboxypeptidase (EC:3.4.16.4); K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
serine-type D-ala-D-ala carboxypeptidase (EC:3.4.16.4)
scnpilot_expt_750_bf_scaffold_1539_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10479..11279
DNA (801bp) protein (267aa)
D-alanine transminase (EC:2.6.1.21); K00824 D-alanine transaminase [EC:2.6.1.21] Tax=GWE1_Thiobacillus_62_9_curated
D-alanine transminase (EC:2.6.1.21)
cytochrome C550 n=1 Tax=Thiobacillus thioparus RepID=UPI0003744C26
scnpilot_expt_750_bf_scaffold_1539_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11508..12128
DNA (621bp) protein (207aa)
lipoate-protein ligase B; K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181] id=12494172 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
lipoate-protein ligase B; K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
lipoate-protein ligase B
scnpilot_expt_750_bf_scaffold_1539_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12178..13293
DNA (1116bp) protein (372aa)
anthranilate phosphoribosyltransferase-like protein id=12494173 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
anthranilate phosphoribosyltransferase-like protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
anthranilate phosphoribosyltransferase-like protein
scnpilot_expt_750_bf_scaffold_1539_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13290..13601
DNA (312bp) protein (104aa)
putative dioxygenase ferredoxin subunit; K05710 dioxygenase ferredoxin subunit id=12494174 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative dioxygenase ferredoxin subunit; K05710 dioxygenase ferredoxin subunit Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
dioxygenase ferredoxin subunit
scnpilot_expt_750_bf_scaffold_1539_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13697..14623
DNA (927bp) protein (309aa)
lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8] id=12494175 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=GWE1_Thiobacillus_62_9_curated
lipoyl synthase
scnpilot_expt_750_bf_scaffold_1539_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14624..15409)
DNA (786bp) protein (262aa)
ABC-2 type transporter, NodJ; K09694 lipooligosaccharide transport system permease protein id=12494176 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
ABC-2 type transporter, NodJ
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacil
scnpilot_expt_750_bf_scaffold_1539_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15564..16469)
DNA (906bp) protein (302aa)
ABC-2 type transporter ATPase; K09695 lipooligosaccharide transport system ATP-binding protein id=12494177 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
ABC-2 type transporter ATPase
ABC-2 type transporter ATPase {ECO:0000313|EMBL:AAZ96230.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobaci
scnpilot_expt_750_bf_scaffold_1539_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16463..17065)
DNA (603bp) protein (201aa)
hypothetical protein; K07018 id=12494178 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein; K07018 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1539_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17088..17405)
DNA (318bp) protein (106aa)
putative ferredoxin 2fe-2s protein id=12494179 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative ferredoxin 2fe-2s protein Tax=GWE1_Thiobacillus_62_9_curated
ferredoxin 2fe-2s protein
scnpilot_expt_750_bf_scaffold_1539_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17398..17778)
DNA (381bp) protein (127aa)
hypothetical protein id=12494180 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1539_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17995..18618
DNA (624bp) protein (208aa)
polysaccharide export outer membrane protein; K01991 polysaccharide export outer membrane protein id=12494181 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
polysaccharide export outer membrane protein; K01991 polysaccharide export outer membrane protein Tax=GWE1_Thiobacillus_62_9_curated
polysaccharide export outer membrane protein
scnpilot_expt_750_bf_scaffold_1539_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18669..20204
DNA (1536bp) protein (512aa)
polysaccharide chain length determinant protein id=12494182 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
polysaccharide chain length determinant protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
polysaccharide chain length determinant protein
scnpilot_expt_750_bf_scaffold_1539_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20776..21054
DNA (279bp) protein (93aa)
protein-tyrosine kinase id=12494183 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
protein-tyrosine kinase Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
protein-tyrosine kinase
scnpilot_expt_750_bf_scaffold_1539_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21026..21955
DNA (930bp) protein (310aa)
hypothetical protein id=12494184 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1539_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22207..22572
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003640E99
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1539_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22894..23613
DNA (720bp) protein (240aa)
ATPase n=1 Tax=Thiobacillus thioparus RepID=UPI000381E924
ATPase Tax=GWE1_Thiobacillus_62_9_curated
ATPase
scnpilot_expt_750_bf_scaffold_1539_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24600..25445
DNA (846bp) protein (282aa)
polysaccharide deacetylase n=1 Tax=Thiobacillus thioparus RepID=UPI0003751438
polysaccharide deacetylase Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
polysaccharide deacetylase
scnpilot_expt_750_bf_scaffold_1539_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25448..26512
DNA (1065bp) protein (355aa)
hypothetical protein id=12495431 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_1539_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26608..27831
DNA (1224bp) protein (408aa)
group 1 glycosyl transferase id=12495432 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
group 1 glycosyl transferase Tax=GWE1_Thiobacillus_62_9_curated
group 1 glycosyl transferase
Displaying items 1-30 of 32 in total

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