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scnpilot_expt_750_bf_scaffold_291

Search features with annotation key words

Displaying items 31-60 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_291_30
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28237..28593)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQ64_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61595.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
hypothetical protein
scnpilot_expt_750_bf_scaffold_291_31
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28721..29722
DNA (1002bp) protein (334aa)
COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF85_9PROT rbh
COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases {ECO:0000313|EMBL:CCU61596.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomo
aminoglycoside phosphotransferase
scnpilot_expt_750_bf_scaffold_291_32
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29742..30467
DNA (726bp) protein (242aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000313|EMBL:CCU61597.1}; EC=2.7.7.24 {ECO:0000313|EMBL:CCU61597.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadal
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGR2_9PROT rbh
nucleotidyl transferase
scnpilot_expt_750_bf_scaffold_291_33
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30668..31987
DNA (1320bp) protein (440aa)
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:CCU61598.1}; EC=3.4.11.9 {ECO:0000313|EMBL:CCU61598.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadace
Xaa-Pro aminopeptidase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH17_9PROT rbh
peptidase M24 rbh
scnpilot_expt_750_bf_scaffold_291_34
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31992..32399
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCT3_NITMU
Uncharacterized protein {ECO:0000313|EMBL:KIO49574.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
scnpilot_expt_750_bf_scaffold_291_35
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32516..33829
DNA (1314bp) protein (438aa)
2-octaprenyl-6-methoxyphenol hydroxylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQ69_9PROT rbh
2-octaprenyl-6-methoxyphenol hydroxylase {ECO:0000313|EMBL:CCU61600.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source
UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
scnpilot_expt_750_bf_scaffold_291_36
unknown

Not on your lists

comp(33702..34346)
DNA (645bp) protein (215aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_291_37
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34348..35361
DNA (1014bp) protein (338aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosom
tRNA-dihydrouridine synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF86_9PROT rbh
dihydrouridine synthase TIM-barrel protein nifR3
scnpilot_expt_750_bf_scaffold_291_38
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35358..35600
DNA (243bp) protein (81aa)
DNA-binding protein Fis n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCT0_NITMU
Fis family transcriptional regulator
DNA-binding protein Fis {ECO:0000313|EMBL:ABB73441.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira mul
scnpilot_expt_750_bf_scaffold_291_39
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35705..37294
DNA (1590bp) protein (530aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3)
Bifunctional purine biosynthesis protein PurH n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH23_9PROT rbh
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nit
scnpilot_expt_750_bf_scaffold_291_40
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37484..38797
DNA (1314bp) protein (438aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138, ECO:0000313|EMBL:KIO49579.1}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138, ECO:0000313|EMBL:KIO49579.1};; GARS {ECO:0000256|HAMAP
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCS8_NITMU rbh
scnpilot_expt_750_bf_scaffold_291_41
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38823..39722
DNA (900bp) protein (300aa)
coproporphyrinogen III oxidase (EC:1.3.3.3)
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCS7_NITMU rbh
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprop
scnpilot_expt_750_bf_scaffold_291_trna_1
unknown

Not on your lists

39842..39914
DNA (73bp)
transferRNA
scnpilot_expt_750_bf_scaffold_291_42
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40223..40843
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HLF8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESZ60621.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
scnpilot_expt_750_bf_scaffold_291_43
unknown

Not on your lists

41717..41992
DNA (276bp) protein (92aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_291_44
unknown

Not on your lists

42146..42328
DNA (183bp) protein (61aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_291_45
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43183..43551
DNA (369bp) protein (123aa)
XRE family transcriptional regulator n=1 Tax=Burkholderia thailandensis RepID=UPI00016A5C08
Uncharacterized protein {ECO:0000313|EMBL:KIO48486.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
XRE family transcriptional regulator
scnpilot_expt_750_bf_scaffold_291_46
unknown

Not on your lists

43873..44070
DNA (198bp) protein (66aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_291_47
unknown

Not on your lists

44682..44873
DNA (192bp) protein (64aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_291_48
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44984..45532)
DNA (549bp) protein (183aa)
Thioredoxin n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5K2_NITMU
Thioredoxin {ECO:0000313|EMBL:KIO48812.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
thioredoxin
scnpilot_expt_750_bf_scaffold_291_49
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45647..47629)
DNA (1983bp) protein (661aa)
Thiol:disulfide interchange protein DsbD {ECO:0000256|HAMAP-Rule:MF_00399}; EC=1.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00399};; Protein-disulfide reductase {ECO:0000256|HAMAP-Rule:MF_00399}; TaxID=1288494
protein-disulfide reductase (EC:1.8.1.8)
Thiol:disulfide interchange protein DsbD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFE5_9PROT rbh
scnpilot_expt_750_bf_scaffold_291_50
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47640..48056)
DNA (417bp) protein (139aa)
CutA1 divalent ion tolerance protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5K0_NITMU
Cation tolerance protein CutA {ECO:0000313|EMBL:KIO48811.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospir
CutA1 divalent ion tolerance protein
scnpilot_expt_750_bf_scaffold_291_51
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48026..48973)
DNA (948bp) protein (316aa)
Nucleoside-diphosphate-sugar epimerases n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHL6_9PROT rbh
Nucleoside-diphosphate-sugar epimerases {ECO:0000313|EMBL:CCU61853.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source=
NAD-dependent epimerase/dehydratase
scnpilot_expt_750_bf_scaffold_291_52
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49007..50092
DNA (1086bp) protein (362aa)
Oxidoreductase FAD/NAD(P)-binding protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5J8_NITMU rbh
CDP-6-deoxy-delta-3,4-glucoseen reductase {ECO:0000313|EMBL:KIO48809.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source=
CDP-6-deoxy-delta-3,4-glucoseen reductase
scnpilot_expt_750_bf_scaffold_291_53
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50144..51364)
DNA (1221bp) protein (407aa)
Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (Unrelated to HemY-type PPO in GramPositives) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQZ7_9PROT rbh
Heme biosynthesis protein HemY {ECO:0000313|EMBL:KIO48803.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
HemY-like
scnpilot_expt_750_bf_scaffold_291_54
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51366..52433)
DNA (1068bp) protein (356aa)
Uroporphyrinogen-III synthase / Homolog of E. coli HemX protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFE7_9PROT rbh
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:KIO48802.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospir
hypothetical protein
scnpilot_expt_750_bf_scaffold_291_55
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52408..53229)
DNA (822bp) protein (274aa)
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:CCU61857.1}; EC=4.2.1.75 {ECO:0000313|EMBL:CCU61857.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosom
uroporphyrinogen-III synthase (EC:4.2.1.75)
Uroporphyrinogen-III synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHB2_9PROT rbh
scnpilot_expt_750_bf_scaffold_291_56
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53226..54197)
DNA (972bp) protein (324aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260, ECO:0000313|EMBL:KIO48800.1}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260, ECO:0000256|SAAS:S
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHM0_9PROT rbh
scnpilot_expt_750_bf_scaffold_291_57
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54314..57145
DNA (2832bp) protein (944aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|HAMAP-Rule:MF_00595, ECO:0000256|SAAS:SAAS00018769}; Short=PEPC {ECO:0000256|HAMAP-Rule:MF_00595};; Short=PEPCase {ECO:0000256|HAMAP-Rule:MF_00595};; EC=4.
phosphoenolpyruvate carboxylase (EC:4.1.1.31)
Phosphoenolpyruvate carboxylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH56_9PROT rbh
scnpilot_expt_750_bf_scaffold_291_58
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57203..58582
DNA (1380bp) protein (460aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR02_9PROT rbh
(dimethylallyl)adenosine tRNA methylthiotransferase
Displaying items 31-60 of 108 in total

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