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scnpilot_expt_750_bf_scaffold_291

Search features with annotation key words

Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_291_1
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..94
DNA (93bp) protein (31aa)
Copper resistance protein D {ECO:0000313|EMBL:CCU63341.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospir
scnpilot_expt_750_bf_scaffold_291_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

145..684
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHR9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO48754.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
scnpilot_expt_750_bf_scaffold_291_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(699..2018)
DNA (1320bp) protein (440aa)
Permease of the major facilitator superfamily n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHG1_9PROT rbh
Permease of the major facilitator superfamily {ECO:0000313|EMBL:CCU61927.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" s
major facilitator transporter
scnpilot_expt_750_bf_scaffold_291_4
unknown

Not on your lists

2636..2830
DNA (195bp) protein (65aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_291_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3171..3665)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIB4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO49855.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
scnpilot_expt_750_bf_scaffold_291_6
Trichoderma atroviride, Trichoderma, Hypocreales, Hypocreomycetidae, Ascomycota, Fungi

Not on your lists

3861..4544
DNA (684bp) protein (228aa)
Putative uncharacterized protein n=1 Tax=Hypocrea atroviridis (strain ATCC 20476 / IMI 206040) RepID=G9NP38_HYPAI rbh
Uncharacterized protein {ECO:0000313|EMBL:EHK47824.1}; TaxID=452589 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Hypocreaceae; Trich
isochorismatase
scnpilot_expt_750_bf_scaffold_291_trna_3
unknown

Not on your lists

comp(4804..4876)
DNA (73bp)
transferRNA
scnpilot_expt_750_bf_scaffold_291_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5237..5683
DNA (447bp) protein (149aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169,
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5D0_NITMU
scnpilot_expt_750_bf_scaffold_291_8
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5886..6347
DNA (462bp) protein (154aa)
Biotin carboxyl carrier protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5D1_NITMU
acetyl-CoA carboxylase, biotin carboxyl carrier protein
Biotin carboxyl carrier protein {ECO:0000313|EMBL:ABB76040.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosos
scnpilot_expt_750_bf_scaffold_291_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6412..7767
DNA (1356bp) protein (452aa)
Biotin carboxylase of acetyl-CoA carboxylase {ECO:0000313|EMBL:CCU61914.1}; EC=6.3.4.14 {ECO:0000313|EMBL:CCU61914.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomona
Biotin carboxylase of acetyl-CoA carboxylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH98_9PROT rbh
acetyl-CoA carboxylase, biotin carboxylase
scnpilot_expt_750_bf_scaffold_291_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7964..8803
DNA (840bp) protein (280aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_0073
Ribosomal protein L11 methyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHQ7_9PROT rbh
prmA; ribosomal protein L11 methyltransferase
scnpilot_expt_750_bf_scaffold_291_11
R_Betaproteobacteria_61_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9434..9820
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002E09288
hypothetical protein Tax=RifCSPlowO2_12_Betaproteobacteria_61_14_curated
hypothetical protein
scnpilot_expt_750_bf_scaffold_291_12
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10114..10926
DNA (813bp) protein (271aa)
ABC transporter related protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5D5_NITMU rbh
ABC transporter-like protein
ABC transporter related protein {ECO:0000313|EMBL:ABB76036.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosos
scnpilot_expt_750_bf_scaffold_291_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10919..11716
DNA (798bp) protein (266aa)
Uncharacterized ABC transporter, permease component YrbE n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR50_9PROT rbh
ABC transporter permease {ECO:0000313|EMBL:KIO48764.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
scnpilot_expt_750_bf_scaffold_291_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11716..12198
DNA (483bp) protein (161aa)
Uncharacterized ABC transporter, periplasmic component YrbD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH94_9PROT
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIO48765.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source=
hypothetical protein
scnpilot_expt_750_bf_scaffold_291_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12278..12922
DNA (645bp) protein (215aa)
Toluene tolerance n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5D8_NITMU rbh
Signal peptide protein {ECO:0000313|EMBL:KIO48766.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. N
toluene tolerance
scnpilot_expt_750_bf_scaffold_291_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12927..13229
DNA (303bp) protein (101aa)
STAS domain n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHE5_9PROT
Anti-sigma-factor antagonist protein {ECO:0000313|EMBL:KIO48767.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitr
Sulfate transporter/antisigma-factor antagonist STAS
scnpilot_expt_750_bf_scaffold_291_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13382..13630
DNA (249bp) protein (83aa)
YrbA protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH89_9PROT
YrbA protein {ECO:0000313|EMBL:CCU61904.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
BolA-like protein
scnpilot_expt_750_bf_scaffold_291_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13671..14519)
DNA (849bp) protein (283aa)
RNA polymerase sigma factor RpoH n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHE0_9PROT rbh
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteri
RNA polymerase factor sigma-32
scnpilot_expt_750_bf_scaffold_291_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14636..15508)
DNA (873bp) protein (291aa)
Cell division protein FtsX n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFG3_9PROT rbh
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
hypothetical protein
scnpilot_expt_750_bf_scaffold_291_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15541..16194)
DNA (654bp) protein (218aa)
Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR41_9PROT rbh
Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) {ECO:0000313|EMBL:CCU61900.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadace
ABC transporter-like protein
scnpilot_expt_750_bf_scaffold_291_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16249..17244)
DNA (996bp) protein (332aa)
Signal recognition particle receptor FtsY n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH87_9PROT rbh
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria;
signal recognition particle-docking protein FtsY
scnpilot_expt_750_bf_scaffold_291_22
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17519..18991
DNA (1473bp) protein (491aa)
FIG015547: peptidase, M16 family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHP8_9PROT rbh
Peptidase M16 {ECO:0000313|EMBL:KIO48831.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
peptidase M16-like protein
scnpilot_expt_750_bf_scaffold_291_23
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19130..20488
DNA (1359bp) protein (453aa)
FIG015287: Zinc protease n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHD8_9PROT rbh
Zinc protease {ECO:0000313|EMBL:KIO48775.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
peptidase M16-like protein
scnpilot_expt_750_bf_scaffold_291_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20534..21115
DNA (582bp) protein (194aa)
16S rRNA (Guanine(966)-N(2))-methyltransferase ## SSU rRNA m(2)G966 {ECO:0000313|EMBL:CCU61896.1}; EC=2.1.1.171 {ECO:0000313|EMBL:CCU61896.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betapro
16S rRNA (Guanine(966)-N(2))-methyltransferase ## SSU rRNA m(2)G966 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFG2_9PROT
hypothetical protein
scnpilot_expt_750_bf_scaffold_291_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21108..21611
DNA (504bp) protein (168aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyr
Phosphopantetheine adenylyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR36_9PROT
Phosphopantetheine adenylyltransferase
scnpilot_expt_750_bf_scaffold_291_26
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21622..21873
DNA (252bp) protein (84aa)
Ferredoxin n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JRT4_9GAMM
fdx; ferredoxin
Ferredoxin {ECO:0000313|EMBL:ESQ15000.1}; TaxID=1385625 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured
scnpilot_expt_750_bf_scaffold_291_27
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21910..22665)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHP3_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:KIO48779.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
scnpilot_expt_750_bf_scaffold_291_28
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22784..26266)
DNA (3483bp) protein (1161aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitroso
DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III alpha subunit n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHD5_9PROT rbh
scnpilot_expt_750_bf_scaffold_291_29
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26589..28115)
DNA (1527bp) protein (509aa)
MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGI4_9PROT rbh
MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein {ECO:0000313|EMBL:CCU61594.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosos
Mg chelatase subunit ChlI
Displaying items 1-30 of 108 in total

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