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scnpilot_expt_750_bf_scaffold_1031

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1031_1
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..101
DNA (99bp) protein (33aa)
elongation factor Tu n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003452E3A
elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacte
scnpilot_expt_750_bf_scaffold_1031_2
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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315..902
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S177_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD87954.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
hypothetical protein
scnpilot_expt_750_bf_scaffold_1031_trna_1
unknown

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971..1043
DNA (73bp)
transferRNA
scnpilot_expt_750_bf_scaffold_1031_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1116..1442)
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VHI9_RHOPX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAE29333.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas
scnpilot_expt_750_bf_scaffold_1031_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1852..2043
DNA (192bp) protein (64aa)
Protein translocase subunit SecE n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q211C2_RHOPB
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodo
secE; preprotein translocase subunit SecE
scnpilot_expt_750_bf_scaffold_1031_5
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2066..2596
DNA (531bp) protein (177aa)
transcription antitermination protein NusG n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A062E rbh
nusG; transcription antitermination protein NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiale
scnpilot_expt_750_bf_scaffold_1031_6
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2724..3152
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=1 Tax=Afipia birgiae RepID=UPI0003063103
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" sourc
rplK; 50S ribosomal protein L11
scnpilot_expt_750_bf_scaffold_1031_7
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3159..3851
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=1 Tax=Bradyrhizobium elkanii RepID=UPI000379982D rbh
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobi
rplA; 50S ribosomal protein L1
scnpilot_expt_750_bf_scaffold_1031_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3959..4924
DNA (966bp) protein (322aa)
2-hydroxyacid dehydrogenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000379F9AB rbh
putative glyoxylate reductase
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:KIZ35466.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomon
scnpilot_expt_750_bf_scaffold_1031_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5600..6118
DNA (519bp) protein (173aa)
50S ribosomal protein L10 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=RL10_NITHX rbh
rplJ; 50S ribosomal protein L10
50S ribosomal protein L10 {ECO:0000255|HAMAP-Rule:MF_00362}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter ham
scnpilot_expt_750_bf_scaffold_1031_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6173..6544
DNA (372bp) protein (124aa)
50S ribosomal protein L7/L12 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NH58_AFIFE
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC
rplL; 50S ribosomal protein L7/L12
scnpilot_expt_750_bf_scaffold_1031_11
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6960..10985
DNA (4026bp) protein (1342aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta n=160 Tax=Bradyrhizobium RepID=G7D4Y7_BRAJP
rpoB; DNA-directed RNA polymerase subunit beta
scnpilot_expt_750_bf_scaffold_1031_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11114..15316
DNA (4203bp) protein (1401aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6) rbh
DNA-directed RNA polymerase subunit beta' n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=RPOC_NITHX rbh
scnpilot_expt_750_bf_scaffold_1031_13
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15693..17744
DNA (2052bp) protein (684aa)
ATP-dependent Lon protease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HJP3_9BRAD rbh
ATP-dependent Lon protease {ECO:0000313|EMBL:ERF85048.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium
hypothetical protein
scnpilot_expt_750_bf_scaffold_1031_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17946..19928
DNA (1983bp) protein (661aa)
ABC transporter related protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QN41_NITHX rbh
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ABE62356.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter h
scnpilot_expt_750_bf_scaffold_1031_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20749..21120
DNA (372bp) protein (124aa)
PREDICTED: 30S ribosomal protein S12, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C19598
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000255|HAMAP-Rule:MF_00403}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseud
scnpilot_expt_750_bf_scaffold_1031_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


21136..21606
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PCP6_9BRAD rbh
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC
rpsG; 30S ribosomal protein S7
scnpilot_expt_750_bf_scaffold_1031_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21640..23712
DNA (2073bp) protein (691aa)
Elongation factor G n=1 Tax=Afipia felis ATCC 53690 RepID=K8NH64_AFIFE rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiacea
fusA; elongation factor G
scnpilot_expt_750_bf_scaffold_1031_18
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23752..23850
DNA (99bp) protein (33aa)
elongation factor Tu n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DB07F6
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacte
translation elongation factor Tu (EF-TU)
Displaying 19 items

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