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SCNPILOT_EXPT_750_BF_Sphingobacterium_39_4_fragment

SCNPILOT_EXPT_750_BF_Sphingobacterium_39_4
In projects: SCNPILOT_EXPT_750_BF

Consensus taxonomy: Sphingobacterium  →  Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_750_bf_UNK

Properties

Avg. coverage: 3.98 Longest contig: 14.89 Kbp Bin length: 1.14 Mbp GC content: 39.18 %
Contigs count: 167 Features count: 1220 rRNAs count: 0 tRNAs count: 13

Genome completeness

partial RP 20 / 55 BSCG 17 / 51 ASCG 2 / 38

Description

from ESOM

Displaying items 1-50 of 167 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_2538
Order: Sphingobacteriales (53.33%)
15 14891 bp 38.83 3.78 83.43
scnpilot_expt_750_bf_scaffold_4532
Genus: Sphingobacterium (85.71%)
14 6800 bp 38.16 3.86 78.75
scnpilot_expt_750_bf_scaffold_3409
Phylum: Bacteroidetes (64.29%)
14 12277 bp 34.93 4.17 82.67
scnpilot_expt_750_bf_scaffold_2926
Species: Sphingobacterium sp. PM2-P1-29 (53.85%)
13 10521 bp 38.93 3.85 87.97
scnpilot_expt_750_bf_scaffold_2684
Phylum: Bacteroidetes (84.62%)
13 9913 bp 40.34 3.81 86.37
scnpilot_expt_750_bf_scaffold_3300
Species: Sphingobacterium sp. PM2-P1-29 (53.85%)
13 11416 bp 40.25 3.85 91.21
scnpilot_expt_750_bf_scaffold_3830
Genus: Sphingobacterium (92.31%)
13 9863 bp 39.22 4.36 89.67
scnpilot_expt_750_bf_scaffold_2279
Genus: Sphingobacterium (100%)
13 7467 bp 38.25 3.92 92.33
scnpilot_expt_750_bf_scaffold_4061
Genus: Sphingobacterium (76.92%)
13 10966 bp 39.73 3.74 87.56
scnpilot_expt_750_bf_scaffold_2057
Genus: Sphingobacterium (61.54%)
13 9318 bp 37.39 4.27 83.92
scnpilot_expt_750_bf_scaffold_5116
Order: Flavobacteriales (50%)
12 9382 bp 38.88 3.54 88.61
scnpilot_expt_750_bf_scaffold_7745
Genus: Sphingobacterium (50%)
12 9172 bp 37.95 5.26 74.39
scnpilot_expt_750_bf_scaffold_1874
Genus: Sphingobacterium (58.33%)
12 11309 bp 38.58 3.89 79.10
scnpilot_expt_750_bf_scaffold_2389
Phylum: Bacteroidetes (66.67%)
12 9818 bp 36.83 4.56 82.72
scnpilot_expt_750_bf_scaffold_3728
Genus: Sphingobacterium (81.82%)
11 8051 bp 38.06 4.29 87.29
scnpilot_expt_750_bf_scaffold_3482
Species: Sphingobacterium sp. ML3W (63.64%)
11 8297 bp 37.98 3.34 90.97
scnpilot_expt_750_bf_scaffold_3755
Genus: Sphingobacterium (81.82%)
11 8719 bp 41.61 4.42 86.63
scnpilot_expt_750_bf_scaffold_2937
Genus: Sphingobacterium (100%)
11 8525 bp 37.40 3.96 91.64
scnpilot_expt_750_bf_scaffold_2084
Genus: Sphingobacterium (54.55%)
11 12517 bp 37.41 4.23 90.45
scnpilot_expt_750_bf_scaffold_4627
Genus: Sphingobacterium (90.91%)
11 10942 bp 39.91 3.40 89.16
scnpilot_expt_750_bf_scaffold_3454
Genus: Sphingobacterium (54.55%)
11 7291 bp 34.71 4.22 72.71
scnpilot_expt_750_bf_scaffold_2142
Phylum: Bacteroidetes (90%)
10 7006 bp 40.77 4.21 90.61
scnpilot_expt_750_bf_scaffold_1803
Genus: Sphingobacterium (50%)
10 8005 bp 38.45 3.65 74.39
scnpilot_expt_750_bf_scaffold_4551
Genus: Sphingobacterium (80%)
10 8727 bp 39.22 4.55 91.72
scnpilot_expt_750_bf_scaffold_6744
Genus: Sphingobacterium (50%)
10 6761 bp 39.59 3.48 88.70
scnpilot_expt_750_bf_scaffold_5999
Order: Flavobacteriales (50%)
10 7671 bp 40.92 3.62 75.40
scnpilot_expt_750_bf_scaffold_5764
Genus: Sphingobacterium (80%)
10 7874 bp 38.47 4.48 83.67
scnpilot_expt_750_bf_scaffold_1435
Order: Sphingobacteriales (50%)
10 9638 bp 31.22 4.82 78.53
scnpilot_expt_750_bf_scaffold_7331
Species: Sphingobacterium sp. PM2-P1-29 (90%)
10 7918 bp 39.30 4.74 93.85
scnpilot_expt_750_bf_scaffold_2386
Phylum: Bacteroidetes (60%)
10 6486 bp 33.78 4.05 71.46
scnpilot_expt_750_bf_scaffold_7891
Species: Sphingobacterium sp. PM2-P1-29 (55.56%)
9 8047 bp 38.14 3.54 83.40
scnpilot_expt_750_bf_scaffold_2446
Genus: Sphingobacterium (100%)
9 8400 bp 40.12 4.26 89.71
scnpilot_expt_750_bf_scaffold_3535
Order: Flavobacteriales (55.56%)
9 8051 bp 38.06 3.38 94.05
scnpilot_expt_750_bf_scaffold_5887
Phylum: Bacteroidetes (55.56%)
9 6611 bp 36.50 4.05 78.32
scnpilot_expt_750_bf_scaffold_1540
Genus: Sphingobacterium (88.89%)
9 9092 bp 38.17 3.96 85.53
scnpilot_expt_750_bf_scaffold_10267
Order: Flavobacteriales (55.56%)
9 6220 bp 37.19 3.30 78.52
scnpilot_expt_750_bf_scaffold_5161
Genus: Sphingobacterium (66.67%)
9 5411 bp 42.25 4.76 82.55
scnpilot_expt_750_bf_scaffold_2029 9 7302 bp 34.16 3.70 71.61
scnpilot_expt_750_bf_scaffold_3885
Genus: Sphingobacterium (66.67%)
9 7081 bp 40.43 3.81 87.11
scnpilot_expt_750_bf_scaffold_5979
Species: Elizabethkingia anophelis (55.56%)
9 5662 bp 35.36 3.44 79.16
scnpilot_expt_750_bf_scaffold_9056
Phylum: Bacteroidetes (55.56%)
9 7571 bp 37.52 4.23 89.24
scnpilot_expt_750_bf_scaffold_4639
Species: Sphingobacterium sp. PM2-P1-29 (66.67%)
9 6787 bp 37.69 3.98 91.45
scnpilot_expt_750_bf_scaffold_2636
Phylum: Bacteroidetes (88.89%)
9 8405 bp 40.11 3.96 73.06
scnpilot_expt_750_bf_scaffold_2650
Order: Sphingobacteriales (50%)
8 5993 bp 36.24 3.92 89.50
scnpilot_expt_750_bf_scaffold_2653
Phylum: Bacteroidetes (75%)
8 7771 bp 36.73 4.25 79.22
scnpilot_expt_750_bf_scaffold_12886
Order: Sphingobacteriales (50%)
8 5409 bp 40.03 3.79 84.80
scnpilot_expt_750_bf_scaffold_6346
Species: Sphingobacterium sp. PM2-P1-29 (50%)
8 5474 bp 40.15 4.16 84.13
scnpilot_expt_750_bf_scaffold_5845
Species: Sphingobacterium spiritivorum (50%)
8 6260 bp 40.75 3.99 84.78
scnpilot_expt_750_bf_scaffold_5086
Species: Sphingobacterium sp. ML3W (50%)
8 6032 bp 37.00 3.73 94.05
scnpilot_expt_750_bf_scaffold_3002
Genus: Sphingobacterium (50%)
8 5476 bp 38.84 3.56 91.49
Displaying items 1-50 of 167 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.