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scnpilot_expt_750_bf_scaffold_2446

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_2446_1
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(3..788)
DNA (786bp) protein (262aa)
isocitrate dehydrogenase (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446, ECO:0000313|EMBL:AIM36676.1};; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacte
Isocitrate dehydrogenase [NADP] n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MHE8_9SPHI
scnpilot_expt_750_bf_scaffold_2446_2
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(814..2937)
DNA (2124bp) protein (708aa)
Transporter, CPA2 family n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VS31_9SPHI rbh
sodium:proton antiporter
Na+/H+ antiporter {ECO:0000313|EMBL:CDS91453.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium
scnpilot_expt_750_bf_scaffold_2446_3
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(3053..4270)
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NX68_9SPHI rbh
ABC transporter permease rbh
ABC transporter permease {ECO:0000313|EMBL:AIM36674.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingoba
scnpilot_expt_750_bf_scaffold_2446_4
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4422..5339
DNA (918bp) protein (306aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=525373 species="B
Methionyl-tRNA formyltransferase n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VS33_9SPHI rbh
methionyl-tRNA formyltransferase
scnpilot_expt_750_bf_scaffold_2446_5
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5336..5557)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MRU8_9SPHI
Putative transcriptional regulator {ECO:0000313|EMBL:CDS95943.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="
XRE family transcriptional regulator
scnpilot_expt_750_bf_scaffold_2446_6
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5947..6423
DNA (477bp) protein (159aa)
RNA polymerase sigma factor rpoD n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MW39_9SPHI
RNA polymerase sigma factor rpoD
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:CDS95937.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphi
scnpilot_expt_750_bf_scaffold_2446_7
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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6468..6785
DNA (318bp) protein (106aa)
Sigma-70, region 4 n=2 Tax=Sphingobacterium spiritivorum RepID=C2FTX8_9SPHI
Sigma-70, region 4 {ECO:0000313|EMBL:EFK56587.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium
RNA polymerase sigma factor rpoD
scnpilot_expt_750_bf_scaffold_2446_8
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6915..7196)
DNA (282bp) protein (94aa)
Peptidase M16 inactive domain protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FTX7_9SPHI
Putative zinc protease {ECO:0000313|EMBL:CDS91307.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacte
peptidase M16
scnpilot_expt_750_bf_scaffold_2446_9
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7208..8398)
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2HXF1_9SPHI
peptidase M16
Peptidase M16 {ECO:0000313|EMBL:AIM37739.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp.
Displaying 9 items

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