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scnpilot_expt_750_bf_scaffold_1250

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_1250_1
unknown

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2..73
DNA (72bp) protein (24aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_1250_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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101..1309
DNA (1209bp) protein (403aa)
Extracellular ligand-binding receptor n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07K16_RHOP5
extracellular ligand-binding receptor
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ABJ07718.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudo
scnpilot_expt_750_bf_scaffold_1250_3
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2705..2920)
DNA (216bp) protein (72aa)
Probable integrase/recombinase protein n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2K650_RHIEC
integrase/recombinase
Probable integrase/recombinase protein {ECO:0000313|EMBL:ABC91686.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhi
scnpilot_expt_750_bf_scaffold_1250_4
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3508..6699)
DNA (3192bp) protein (1064aa)
Cation efflux system protein CzcA n=2 Tax=Oligotropha carboxidovorans RepID=B6JDG9_OLICO rbh
czcA5; cation efflux system protein CzcA rbh
Cation efflux system protein CzcA {ECO:0000313|EMBL:AEI07887.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha
scnpilot_expt_750_bf_scaffold_1250_5
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6705..7892)
DNA (1188bp) protein (396aa)
Cation efflux system protein CzcB n=2 Tax=Oligotropha carboxidovorans RepID=B6JDH0_OLICO rbh
czcB2; cation efflux system protein CzcB
Cation efflux system protein CzcB {ECO:0000313|EMBL:AEI07886.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha
scnpilot_expt_750_bf_scaffold_1250_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8497..9273)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002DF1BE8 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS39446.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
short-chain dehydrogenase/reductase SDR
scnpilot_expt_750_bf_scaffold_1250_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9296..9994)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PA21_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS39447.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
GntR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_1250_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10171..11427
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PM42_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39448.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
extracellular ligand-binding receptor
scnpilot_expt_750_bf_scaffold_1250_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11530..12408
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFB5_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS39449.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
inner-membrane translocator
scnpilot_expt_750_bf_scaffold_1250_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12420..14693
DNA (2274bp) protein (758aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PIT6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39450.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
ABC transporter-like protein
scnpilot_expt_750_bf_scaffold_1250_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14653..14850
DNA (198bp) protein (66aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E3FBE7
Uncharacterized protein {ECO:0000313|EMBL:EKS39450.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
ABC transporter-like protein
scnpilot_expt_750_bf_scaffold_1250_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15277..15726
DNA (450bp) protein (150aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein (EC:1.1.1.35)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PD26_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39451.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
scnpilot_expt_750_bf_scaffold_1250_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15760..16683
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00031C5CCD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS39452.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_1250_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16701..17534)
DNA (834bp) protein (278aa)
PcaR/PcaU/PobR family beta-ketoadipate pathway transcriptional regulator n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PA85_9BRAD rbh
PcaR/PcaU/PobR family beta-ketoadipate pathway transcriptional regulator {ECO:0000313|EMBL:EKS36525.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiac
IclR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_1250_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17614..18591
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6Z0_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36524.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
extra-cytoplasmic solute receptor family protein 29
scnpilot_expt_750_bf_scaffold_1250_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18628..19686
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDT9_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36523.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_1250_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19683..20786
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P1P9_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36522.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_expt_750_bf_scaffold_1250_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20789..21202
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P4U7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36521.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase
scnpilot_expt_750_bf_scaffold_1250_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21252..21569
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PA81_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36520.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
Rieske (2Fe-2S) domain-containing protein
scnpilot_expt_750_bf_scaffold_1250_20
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22321..23187
DNA (867bp) protein (289aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6I9_9BRAD
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EFI51936.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipi
acrE; acriflavine resistance protein E
scnpilot_expt_750_bf_scaffold_1250_21
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23194..26355
DNA (3162bp) protein (1054aa)
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6I8_9BRAD rbh
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family {ECO:0000313|EMBL:EFI51935.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;"
acrB2; acriflavine resistance protein AcrB rbh
scnpilot_expt_750_bf_scaffold_1250_22
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26453..29056
DNA (2604bp) protein (868aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YEN2_9BRAD rbh
Diguanylate cyclase {ECO:0000313|EMBL:KGT74154.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.
hypothetical protein
scnpilot_expt_750_bf_scaffold_1250_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29065..30030
DNA (966bp) protein (322aa)
2-hydroxyacid dehydrogenase (EC:1.1.1.95)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PM34_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS39438.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
scnpilot_expt_750_bf_scaffold_1250_24
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30088..31020)
DNA (933bp) protein (311aa)
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYT2_9RHIZ
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase {ECO:0000313|EMBL:EIM29124.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobia
alkane 1-monooxygenase
scnpilot_expt_750_bf_scaffold_1250_25
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31153..32706)
DNA (1554bp) protein (518aa)
Peptidoglycan transpeptidase, ErfK-YbiS-YhnG family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QGK6_NITHX rbh
hypothetical protein rbh
Peptidoglycan transpeptidase, ErfK-YbiS-YhnG family {ECO:0000313|EMBL:ABE64641.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiacea
scnpilot_expt_750_bf_scaffold_1250_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32863..35175)
DNA (2313bp) protein (771aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PA12_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS39437.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
TonB-dependent receptor
scnpilot_expt_750_bf_scaffold_1250_27
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35363..36250)
DNA (888bp) protein (296aa)
2-hydroxy-3-oxopropionate reductase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAT1_9BRAD rbh
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:EKS36705.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomea
tartronate semialdehyde reductase
scnpilot_expt_750_bf_scaffold_1250_28
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36273..37058)
DNA (786bp) protein (262aa)
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobia
Hydroxypyruvate isomerase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PC66_9BRAD rbh
hydroxypyruvate isomerase
scnpilot_expt_750_bf_scaffold_1250_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37094..38890)
DNA (1797bp) protein (599aa)
gcl; glyoxylate carboligase (EC:4.1.1.47)
Glyoxylate carboligase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEC7_9BRAD rbh
Glyoxylate carboligase {ECO:0000313|EMBL:EKS36703.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.
scnpilot_expt_750_bf_scaffold_1250_30
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39037..39888)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2A2_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS35980.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
transcriptional regulator
Displaying items 1-30 of 50 in total

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