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scnpilot_expt_750_bf_scaffold_4453

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_4453_1
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..929)
DNA (927bp) protein (309aa)
Coniferyl aldehyde dehydrogenase n=1 Tax=mine drainage metagenome RepID=T1C9V3_9ZZZZ
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibac
aldehyde dehydrogenase
scnpilot_expt_750_bf_scaffold_4453_2
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1044..1583
DNA (540bp) protein (180aa)
Family 3 carbonic anhydrase n=1 Tax=mine drainage metagenome RepID=T1B106_9ZZZZ
Carbonic anhydrase {ECO:0000313|EMBL:GAN45117.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter se
carbonic anhydrase
scnpilot_expt_750_bf_scaffold_4453_3
unknown

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1587..1940
DNA (354bp) protein (118aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_4453_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1951..2211)
DNA (261bp) protein (87aa)
Putative Fe-S oxidoreductase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ89_9GAMM
putative Fe-S oxidoreductase
Putative Fe-S oxidoreductase {ECO:0000313|EMBL:AGG90990.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;"
scnpilot_expt_750_bf_scaffold_4453_5
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2215..3102)
DNA (888bp) protein (296aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037230C6
shikimate 5-dehydrogenase
scnpilot_expt_750_bf_scaffold_4453_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3139..4131)
DNA (993bp) protein (331aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadal
Delta-aminolevulinic acid dehydratase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VRB3_9GAMM
delta-aminolevulinic acid dehydratase
scnpilot_expt_750_bf_scaffold_4453_7
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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4314..6863
DNA (2550bp) protein (850aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI0003778128
signal transduction protein containing a membrane domain an EAL and a GGDEF domain Tax=RBG_16_Gamma2_60_9_curated
signal transduction protein containing a membrane domain an EAL and a GGDEF domain
scnpilot_expt_750_bf_scaffold_4453_8
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6832..7905
DNA (1074bp) protein (358aa)
Uncharacterised protein {ECO:0000313|EMBL:CRE20825.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
id=12551333 bin=BDI tax=BDI organism_group=Betaproteobacteria
scnpilot_expt_750_bf_scaffold_4453_9
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8125..8604
DNA (480bp) protein (160aa)
exodeoxyribonuclease III n=1 Tax=Rudaea cellulosilytica RepID=UPI00037EC906
Exodeoxyribonuclease III {ECO:0000313|EMBL:GAN45121.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibac
exodeoxyribonuclease III
scnpilot_expt_750_bf_scaffold_4453_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8597..9121
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035EA1BD
yecA family protein
YecA family protein {ECO:0000313|EMBL:AGG90984.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitr
Displaying 10 items

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