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SCNPILOT_EXPT_750_BF_Xanthomonadales_64_5_fragment

SCNPILOT_EXPT_750_BF_Xanthomonadales_64_5
In projects: SCNPILOT_EXPT_750_BF

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_750_bf_UNK

Properties

Avg. coverage: 4.83 Longest contig: 16.21 Kbp Bin length: 381.42 Kbp GC content: 64.21 %
Contigs count: 54 Features count: 404 rRNAs count: 0 tRNAs count: 2

Genome completeness

partial RP 6 / 55 BSCG 3 / 51 ASCG 0 / 38

Description

from ESOM

Displaying items 1-50 of 54 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_1786
Order: Xanthomonadales (88.89%)
18 16212 bp 62.65 4.97 84.84
scnpilot_expt_750_bf_scaffold_1498
Order: Xanthomonadales (50%)
12 12018 bp 64.89 5.05 84.87
scnpilot_expt_750_bf_scaffold_1559
Order: Xanthomonadales (75%)
12 8966 bp 61.89 5.13 80.30
scnpilot_expt_750_bf_scaffold_9722
Order: Xanthomonadales (63.64%)
11 8261 bp 64.45 4.27 95.47
scnpilot_expt_750_bf_scaffold_3399
Order: Xanthomonadales (63.64%)
11 9232 bp 65.66 5.04 96.02
scnpilot_expt_750_bf_scaffold_4453
Order: Xanthomonadales (70%)
10 9121 bp 66.20 4.96 94.20
scnpilot_expt_750_bf_scaffold_4205
Genus: Rhodanobacter (50%)
10 9243 bp 66.46 5.14 91.01
scnpilot_expt_750_bf_scaffold_6187
Order: Xanthomonadales (60%)
10 6681 bp 63.96 3.97 76.55
scnpilot_expt_750_bf_scaffold_2059
Phylum: Proteobacteria (70%)
10 8099 bp 62.77 4.63 84.68
scnpilot_expt_750_bf_scaffold_4526
Order: Xanthomonadales (66.67%)
9 10168 bp 64.05 5.24 89.37
scnpilot_expt_750_bf_scaffold_1337
Class: Gammaproteobacteria (66.67%)
9 10436 bp 64.28 5.20 91.13
scnpilot_expt_750_bf_scaffold_6480
Species: Mizugakiibacter sediminis (55.56%)
9 6577 bp 64.25 4.75 79.96
scnpilot_expt_750_bf_scaffold_7762
Order: Xanthomonadales (100%)
9 5893 bp 65.31 5.05 89.70
scnpilot_expt_750_bf_scaffold_2864
Order: Xanthomonadales (55.56%)
9 9140 bp 66.35 5.11 92.33
scnpilot_expt_750_bf_scaffold_4902
Order: Xanthomonadales (55.56%)
9 6027 bp 60.88 4.52 78.10
scnpilot_expt_750_bf_scaffold_10927
Order: Xanthomonadales (77.78%)
9 7273 bp 63.33 4.02 86.04
scnpilot_expt_750_bf_scaffold_4454
Order: Xanthomonadales (75%)
8 7198 bp 64.89 4.72 81.98
scnpilot_expt_750_bf_scaffold_3767
Order: Xanthomonadales (62.5%)
8 6525 bp 61.01 4.29 82.90
scnpilot_expt_750_bf_scaffold_2745
Genus: Rhodanobacter (50%)
8 5841 bp 62.59 5.09 84.54
scnpilot_expt_750_bf_scaffold_4806
Class: Betaproteobacteria (50%)
8 7596 bp 65.26 5.23 95.93
scnpilot_expt_750_bf_scaffold_10064
Order: Xanthomonadales (50%)
8 5088 bp 63.86 4.37 76.77
scnpilot_expt_750_bf_scaffold_7769
Phylum: Proteobacteria (62.5%)
8 6729 bp 65.98 4.98 90.99
scnpilot_expt_750_bf_scaffold_5496
Order: Xanthomonadales (87.5%)
8 6946 bp 63.56 4.61 93.46
scnpilot_expt_750_bf_scaffold_3930
Order: Xanthomonadales (62.5%)
8 8200 bp 61.37 4.88 73.43
scnpilot_expt_750_bf_scaffold_7600
Order: Xanthomonadales (75%)
8 6105 bp 64.59 4.79 92.92
scnpilot_expt_750_bf_scaffold_4969
Species: Oleiagrimonas soli (57.14%)
7 6886 bp 66.37 4.65 91.97
scnpilot_expt_750_bf_scaffold_9172
Order: Xanthomonadales (71.43%)
7 5971 bp 63.88 4.48 78.48
scnpilot_expt_750_bf_scaffold_3861
Order: Xanthomonadales (85.71%)
7 5494 bp 64.69 5.32 85.89
scnpilot_expt_750_bf_scaffold_2276
Phylum: Proteobacteria (57.14%)
7 8346 bp 65.46 6.08 89.32
scnpilot_expt_750_bf_scaffold_3102
Order: Xanthomonadales (85.71%)
7 5371 bp 65.09 4.98 92.83
scnpilot_expt_750_bf_scaffold_5750
Order: Xanthomonadales (57.14%)
7 6707 bp 64.81 4.47 85.70
scnpilot_expt_750_bf_scaffold_4652
Order: Xanthomonadales (85.71%)
7 5948 bp 63.52 4.29 89.27
scnpilot_expt_750_bf_scaffold_6587
Genus: Lysobacter (50%)
6 5368 bp 65.39 5.64 79.64
scnpilot_expt_750_bf_scaffold_2396
Order: Xanthomonadales (50%)
6 6474 bp 65.59 4.71 92.96
scnpilot_expt_750_bf_scaffold_2657
Species: Methylococcus capsulatus (50%)
6 6773 bp 60.93 4.69 76.01
scnpilot_expt_750_bf_scaffold_4430
Order: Xanthomonadales (66.67%)
6 5637 bp 63.05 4.57 95.26
scnpilot_expt_750_bf_scaffold_3239
Order: Xanthomonadales (100%)
6 8041 bp 63.59 4.85 86.22
scnpilot_expt_750_bf_scaffold_8198
Order: Xanthomonadales (83.33%)
6 5409 bp 64.74 5.13 95.73
scnpilot_expt_750_bf_scaffold_3824
Order: Xanthomonadales (83.33%)
6 6699 bp 63.89 3.88 100.00
scnpilot_expt_750_bf_scaffold_6439
Order: Xanthomonadales (50%)
6 6506 bp 62.40 5.23 91.35
scnpilot_expt_750_bf_scaffold_7216
Phylum: Proteobacteria (50%)
6 5302 bp 63.00 4.48 75.76
scnpilot_expt_750_bf_scaffold_4326
Class: Gammaproteobacteria (66.67%)
6 7706 bp 64.94 5.09 89.31
scnpilot_expt_750_bf_scaffold_3639
Order: Xanthomonadales (83.33%)
6 5663 bp 63.92 4.06 92.76
scnpilot_expt_750_bf_scaffold_2328
Genus: Rhodanobacter (50%)
6 6601 bp 65.58 4.66 90.08
scnpilot_expt_750_bf_scaffold_7043
Order: Xanthomonadales (66.67%)
6 5202 bp 61.38 4.33 83.28
scnpilot_expt_750_bf_scaffold_7628
Order: Xanthomonadales (80%)
5 5240 bp 63.02 4.25 76.77
scnpilot_expt_750_bf_scaffold_2686
Order: Xanthomonadales (60%)
5 5943 bp 65.35 4.71 95.96
scnpilot_expt_750_bf_scaffold_6416
Order: Xanthomonadales (60%)
5 7218 bp 65.82 5.54 92.10
scnpilot_expt_750_bf_scaffold_12807
Order: Xanthomonadales (60%)
5 5587 bp 64.06 4.65 93.43
scnpilot_expt_750_bf_scaffold_7349
Class: Gammaproteobacteria (60%)
5 6700 bp 65.30 5.37 85.12
Displaying items 1-50 of 54 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.