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scnpilot_expt_750_p_scaffold_2357_curated

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_2357_curated_1
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(3..2396)
DNA (2394bp) protein (798aa)
4-alpha-glucanotransferase (EC:2.4.1.25); K00705 4-alpha-glucanotransferase [EC:2.4.1.25]
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IW01_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK02801.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
scnpilot_expt_750_p_scaffold_2357_curated_2
RLO_Flavobacteria_35_11, Flavobacteriia, Bacteroidetes, Bacteria

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comp(2548..3072)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI00035D9F1E
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Flavobacteria_35_11_curated
scnpilot_expt_750_p_scaffold_2357_curated_3
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(3111..4376)
DNA (1266bp) protein (422aa)
cys/met metabolism pyridoxaL-phosphate-dependent protein; K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WXB4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK04871.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
scnpilot_expt_750_p_scaffold_2357_curated_4
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4650..7238
DNA (2589bp) protein (863aa)
Chaperone ClpB n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WXF4_9PORP
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
endopeptidase Clp ATP-binding subunit B; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
scnpilot_expt_750_p_scaffold_2357_curated_5
Prevotella sp. CAG:1124, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7321..7737)
DNA (417bp) protein (139aa)
TonB family domain-containing protein n=1 Tax=Prevotella sp. CAG:1124 RepID=R5KBM7_9BACT
TonB family domain-containing protein {ECO:0000313|EMBL:CCY64173.1}; TaxID=1262920 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:1124.;"
scnpilot_expt_750_p_scaffold_2357_curated_6
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(8065..8733)
DNA (669bp) protein (223aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60); K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WVY0_9PORP
scnpilot_expt_750_p_scaffold_2357_curated_7
Parabacteroides gordonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(8730..8930)
DNA (201bp) protein (67aa)
hypothetical protein; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 small subunit {ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|SAAS:SAAS00198686};; TaxID=1203610 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides gordonii MS-1.;"
Uncharacterized protein n=9 Tax=Bacteroidales RepID=A6LFF6_PARD8
scnpilot_expt_750_p_scaffold_2357_curated_8
Bacteroides sp. CAG:1076, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(8960..10207)
DNA (1248bp) protein (416aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|SAAS:SAAS00195506};; TaxID=1262735 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:1076.;"
xseA; exodeoxyribonuclease VII large subunit (EC:3.1.11.6); K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
Exodeoxyribonuclease VII large subunit n=1 Tax=Bacteroides sp. CAG:1076 RepID=R5MWV9_9BACE
scnpilot_expt_750_p_scaffold_2357_curated_9
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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10617..11537
DNA (921bp) protein (307aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
pyrB; aspartate carbamoyltransferase (EC:2.1.3.2); K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
Aspartate carbamoyltransferase n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IYJ3_9PORP
scnpilot_expt_750_p_scaffold_2357_curated_10
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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11546..12010
DNA (465bp) protein (155aa)
aspartate carbamoyltransferase (EC:2.1.3.2); K00610 aspartate carbamoyltransferase regulatory subunit
Aspartate carbamoyltransferase regulatory chain n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WXY5_9PORP
Aspartate carbamoyltransferase regulatory chain {ECO:0000256|HAMAP-Rule:MF_00002}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
Displaying 10 items

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