ggKbase home page

scnpilot_solids2_trim150_scaffold_1127

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1127_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1071)
DNA (1071bp) protein (357aa)
Copper resistance transmembrane protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWM7_9GAMM
copper-resistance protein, CopA family
Copper-resistance protein, CopA family {ECO:0000313|EMBL:AGG88842.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1127_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1647..1976)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NM93_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88841.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1127_3
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2338..3753)
DNA (1416bp) protein (472aa)
two-component system heavy metal sensor histidine kinase; K07644 two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
Two-component system heavy metal sensor histidine kinase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UNJ1_PSEUP rbh
scnpilot_solids2_trim150_scaffold_1127_4
Alcanivorax pacificus, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3746..4426)
DNA (681bp) protein (227aa)
Two-component system copper resistance phosphate regulon response regulator n=1 Tax=Alcanivorax pacificus W11-5 RepID=K2GS86_9GAMM rbh
Two-component system copper resistance phosphate regulon response regulator {ECO:0000313|EMBL:AJD49249.1}; TaxID=391936 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax pacificus W11-5.;"
two component heavy metal response transcriptional regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR rbh
scnpilot_solids2_trim150_scaffold_1127_5
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5633..6955
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000379C9FE rbh
Outer membrane efflux protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_6
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6952..8421
DNA (1470bp) protein (490aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00030A875A rbh
CzcB family heavy metal RND efflux membrane fusion protein; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_7
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8423..11572
DNA (3150bp) protein (1050aa)
cation transporter n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00036E8D90 rbh
czcA; heavy metal efflux pump CzcA; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_8
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11745..12257
DNA (513bp) protein (171aa)
MerR family transcriptional regulator n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EED2B9 rbh
MerR family transcriptional regulator
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_9
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12254..12568
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00037BCA58
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_10
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12570..13235
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002ECA994 rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_11
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13232..15622
DNA (2391bp) protein (797aa)
ATPase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037A63E2 rbh
heavy metal translocating P-type ATPase
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_12
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15619..16032
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F34D00
Uncharacterized protein {ECO:0000313|EMBL:KFN47044.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1127_13
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16113..17498
DNA (1386bp) protein (462aa)
beta-Casp domain-containing protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F159E2 rbh
mRNA 3'-end processing factor {ECO:0000313|EMBL:KGM50716.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
beta-lactamase domain-containing protein; K07576 metallo-beta-lactamase family protein rbh
scnpilot_solids2_trim150_scaffold_1127_14
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17495..19012
DNA (1518bp) protein (506aa)
thymidine phosphorylase (EC:2.4.2.4) rbh
Putative thymidine phosphorylase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMB4_9GAMM
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_15
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19009..19467
DNA (459bp) protein (153aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030A3926
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_16
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19407..19925
DNA (519bp) protein (173aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030A3926
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_17
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19922..22258
DNA (2337bp) protein (779aa)
D-xylulose 5-phosphate n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D85D71
D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_18
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22284..23873
DNA (1590bp) protein (530aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F79AC5
hypothetical protein; K03688 ubiquinone biosynthesis protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_19
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23909..24391
DNA (483bp) protein (161aa)
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_20
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24388..25245
DNA (858bp) protein (286aa)
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_21
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25245..26429
DNA (1185bp) protein (395aa)
Major facilitator superfamily permease n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUJ0_9RHIZ
major facilitator superfamily permease
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_22
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26432..27625
DNA (1194bp) protein (398aa)
cyclopropane-fatty-acyl-phospholipid synthase; K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] rbh
Cyclopropane fatty acyl phospholipid synthase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UT73_PSEUP rbh
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_23
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27638..28285
DNA (648bp) protein (216aa)
hypothetical protein id=12551597 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_24

Not on your lists

28586..29641
DNA (1056bp) protein (352aa)
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] rbh
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F29A5E rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN52346.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
scnpilot_solids2_trim150_scaffold_1127_25
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30081..31124)
DNA (1044bp) protein (348aa)
Phospholipase D/Transphosphatidylase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VVV2_POLNA
Uncharacterized protein {ECO:0000313|EMBL:KFN47066.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
phospholipase D/transphosphatidylase
scnpilot_solids2_trim150_scaffold_1127_26
Xanthomonas vesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31360..31716
DNA (357bp) protein (119aa)
heavy-metal transporting P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Copper/silver-translocating P-type ATPase n=1 Tax=Xanthomonas vesicatoria ATCC 35937 RepID=F0BHS1_9XANT
Copper/silver-translocating P-type ATPase {ECO:0000313|EMBL:EGD07955.1}; TaxID=925775 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria ATCC 35937.;"
scnpilot_solids2_trim150_scaffold_1127_27
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31918..33261
DNA (1344bp) protein (448aa)
copB; ATPase P; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
ATPase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E8C054
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_28
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33264..33941
DNA (678bp) protein (226aa)
copB; ATPase P; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
ATPase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E8C054
ATPase P {ECO:0000313|EMBL:KGM50711.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
scnpilot_solids2_trim150_scaffold_1127_29
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33904..35007
DNA (1104bp) protein (368aa)
acetate kinase; K00925 acetate kinase [EC:2.7.2.1]
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00036F945D rbh
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1127_30
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35045..36322)
DNA (1278bp) protein (426aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000362C026 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGM50710.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
hypothetical protein
Displaying items 1-30 of 50 in total

View Taxonomy