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scnpilot_solids2_trim150_scaffold_1143

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1143_1

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comp(3..1130)
DNA (1128bp) protein (376aa)
Glycosyl hydrolase, BNR repeat-containing protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T1B506_9ZZZZ
Glycosyl hydrolase, BNR repeat-containing protein {ECO:0000313|EMBL:EQD49310.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1143_2
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1533..1841
DNA (309bp) protein (103aa)
L-asparaginase/GlutRNAGln amidotransferase subunit D (EC:3.5.1.1)
asparaginase n=1 Tax=Dyella japonica RepID=UPI0002F17AAC
Asparaginase {ECO:0000313|EMBL:AIF49143.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
scnpilot_solids2_trim150_scaffold_1143_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1891..2448)
DNA (558bp) protein (186aa)
Putative FeS assembly SUF system protein SufT n=2 Tax=Rhodanobacter RepID=I4WH77_9GAMM
putative FeS assembly SUF system protein SufT
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1143_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2647..3099
DNA (453bp) protein (151aa)
Uncharacterized protein n=2 Tax=Rhodanobacter RepID=I4WH76_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00044.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1143_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3140..4618)
DNA (1479bp) protein (493aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKQ3_9GAMM
NAD/NADP transhydrogenase beta subunit
scnpilot_solids2_trim150_scaffold_1143_6
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4615..4929)
DNA (315bp) protein (105aa)
Uncharacterized protein n=2 Tax=Rhodanobacter RepID=M4NEV9_9GAMM
hypothetical protein
NAD(P) transhydrogenase {ECO:0000313|EMBL:AHX14318.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
scnpilot_solids2_trim150_scaffold_1143_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4960..5595
DNA (636bp) protein (212aa)
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:EIM02695.1}; EC=2.7.7.6 {ECO:0000313|EMBL:EIM02695.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
RNA polymerase factor sigma-70 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WTA3_9GAMM
RNA polymerase sigma factor, sigma-70 family
scnpilot_solids2_trim150_scaffold_1143_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5592..5981
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKQ6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00048.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1143_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5989..6510
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKQ7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00049.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Protein of unknown function (DUF3106)
scnpilot_solids2_trim150_scaffold_1143_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6641..7741)
DNA (1101bp) protein (367aa)
NAD/NADP transhydrogenase alpha subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NBV6_9GAMM
NAD/NADP transhydrogenase alpha subunit
NAD/NADP transhydrogenase alpha subunit {ECO:0000313|EMBL:AGG88089.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1143_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7922..8491
DNA (570bp) protein (190aa)
Nitroreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUZ2_9GAMM
Nitroreductase {ECO:0000313|EMBL:EIL91033.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
nitroreductase
scnpilot_solids2_trim150_scaffold_1143_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8479..9393
DNA (915bp) protein (305aa)
5'-3' exonuclease n=1 Tax=Rhodanobacter denitrificans RepID=I4WH67_9GAMM
5'-3' exonuclease (including N-terminal domain of PolI)
5'-3' exonuclease (Including N-terminal domain of PolI) {ECO:0000313|EMBL:AGG88086.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1143_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9441..10037
DNA (597bp) protein (199aa)
NTP pyrophosphohydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0C6_9GAMM
NTP pyrophosphohydrolase {ECO:0000313|EMBL:EIL92917.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
NTP pyrophosphohydrolase
scnpilot_solids2_trim150_scaffold_1143_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10218..11378
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYS3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92364.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Flagellar hook-length control protein FliK
scnpilot_solids2_trim150_scaffold_1143_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11375..11632
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYX7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90047.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1143_16
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11642..11998)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBK5_9GAMM
Protein of unknown function (DUF2802)
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_1143_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12081..13142)
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000379788C
flagellar motor protein
Flagellar motor protein {ECO:0000313|EMBL:AGG90050.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1143_18
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13139..13879)
DNA (741bp) protein (247aa)
Flagellar motor component n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYS8_9GAMM
Flagellar motor component {ECO:0000313|EMBL:EIL92369.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
flagellar motor component
scnpilot_solids2_trim150_scaffold_1143_19
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13884..15245)
DNA (1362bp) protein (454aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
cheA2; chemotaxis protein chea (EC:2.7.13.3); K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
Probable chemotaxis protein chea n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UDA2_XANAP
scnpilot_solids2_trim150_scaffold_1143_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15255..15896)
DNA (642bp) protein (214aa)
Protein phosphatase CheZ {ECO:0000256|PIRNR:PIRNR002884}; EC=3.1.3.- {ECO:0000256|PIRNR:PIRNR002884};; Chemotaxis protein CheZ {ECO:0000256|PIRNR:PIRNR002884}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Chemotaxis protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYY3_9GAMM
chemotaxis protein
scnpilot_solids2_trim150_scaffold_1143_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15893..16321)
DNA (429bp) protein (143aa)
chemotaxis protein CheY n=1 Tax=Dyella japonica RepID=UPI000318A67E
Response regulator receiver protein {ECO:0000313|EMBL:EIL96764.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
scnpilot_solids2_trim150_scaffold_1143_22
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16356..17084)
DNA (729bp) protein (243aa)
RNA polymerase sigma factor FliA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYT2_9GAMM
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG
scnpilot_solids2_trim150_scaffold_1143_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17081..18019)
DNA (939bp) protein (313aa)
Site-determining protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYT3_9GAMM
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ATPase involved in chromosome partitioning
scnpilot_solids2_trim150_scaffold_1143_24
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18034..19347)
DNA (1314bp) protein (438aa)
Flagellar biosynthetic protein FlhF n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBC6_9GAMM
flagellar biosynthetic protein FlhF
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1143_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19453..21546)
DNA (2094bp) protein (698aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Rhodanobacter denitrificans RepID=I4WYY8_9GAMM rbh
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:AGG90058.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
flagellar biosynthesis protein FlhA rbh
scnpilot_solids2_trim150_scaffold_1143_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21559..22698)
DNA (1140bp) protein (380aa)
Flagellar biosynthetic protein FlhB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBC8_9GAMM
Flagellar biosynthetic protein FlhB {ECO:0000313|EMBL:EIL96769.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
flagellar biosynthetic protein FlhB
scnpilot_solids2_trim150_scaffold_1143_27
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22702..23472)
DNA (771bp) protein (257aa)
Flagellar biosynthetic protein FliR n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBC9_9GAMM
flagellar biosynthetic protein FliR
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1143_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23469..23738)
DNA (270bp) protein (90aa)
Flagellar biosynthetic protein FliQ n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYT8_9GAMM
flagellar biosynthetic protein FliQ
Flagellar biosynthetic protein FliQ {ECO:0000313|EMBL:AGG90061.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1143_29
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23772..23966)
DNA (195bp) protein (65aa)
Flagellar biosynthesis protein FliP n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYC0_9GAMM
Flagellar biosynthesis protein FliP {ECO:0000313|EMBL:EIL92211.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
flagellar biosynthetic protein FliP
Displaying 29 items

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