ggKbase home page

scnpilot_solids2_trim150_scaffold_1265

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1265_1
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2..649)
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003665386
Putative xanthan lyase {ECO:0000313|EMBL:AHM60756.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
xanthan lyase
scnpilot_solids2_trim150_scaffold_1265_2
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(660..2249)
DNA (1590bp) protein (530aa)
RagB/SusD domain protein id=1872740 bin=GWE2_Bacteroidetes_42_39 species=Chitinophaga pinensis genus=Chitinophaga taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good + rbh
RagB/SusD domain-containing protein rbh
Tax=GWE2_Bacteroidetes_42_39_curated
scnpilot_solids2_trim150_scaffold_1265_3
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2336..5401)
DNA (3066bp) protein (1022aa)
SusC/RagA family TonB-linked outer membrane protein id=4319083 bin=GWF2_Bacteroidetes_42_66 species=unknown genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_42_66 organism_group=Bacteroidetes organism_desc=a73 rbh
TonB-dependent receptor rbh
Tax=GWE2_Bacteroidetes_42_39_curated
scnpilot_solids2_trim150_scaffold_1265_4
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5594..6496
DNA (903bp) protein (301aa)
Helix-turn-helix-domain containing protein AraC type n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XYN2_PEDHD rbh
AraC family transcriptional regulator rbh
Helix-turn-helix-domain containing protein AraC type {ECO:0000313|EMBL:ACU04514.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_solids2_trim150_scaffold_1265_5
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7214..8458
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Indibacter alkaliphilus LW1 RepID=S2DDX0_9BACT rbh
Signal peptide protein {ECO:0000313|EMBL:ETZ22337.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
major facilitator superfamily protein rbh
scnpilot_solids2_trim150_scaffold_1265_6
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8672..8866
DNA (195bp) protein (65aa)
RNA polymerase sigma-70 factor, Bacteroides expansion family 1 n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KR60_SOLCM
RNA polymerase sigma-70 factor, Bacteroides expansion family 1
RNA polymerase sigma-70 factor, Bacteroides expansion family 1 {ECO:0000313|EMBL:AFD07266.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_solids2_trim150_scaffold_1265_7
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8941..9624)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000371B197
Murein DD-endopeptidase {ECO:0000313|EMBL:GAO44346.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
NLP/P60 protein
scnpilot_solids2_trim150_scaffold_1265_8

Not on your lists

9908..10222
DNA (315bp) protein (105aa)
Marine sediment metagenome DNA, contig: S01H4_L06745 {ECO:0000313|EMBL:GAG81707.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
DNA polymerase beta domain protein region id=1854861 bin=GWE2_Bacteroidetes_42_39 species=unknown genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
DNA polymerase subunit beta
scnpilot_solids2_trim150_scaffold_1265_9
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10219..10617
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Anaerophaga thermohalophila RepID=UPI0003157EA9
HEPN domain-containing protein
Tax=RBG_13_Bacteroidetes_42_15_curated
scnpilot_solids2_trim150_scaffold_1265_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10750..14352
DNA (3603bp) protein (1201aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA polymerase III subunit alpha n=1 Tax=Segetibacter koreensis RepID=UPI00037C5209
scnpilot_solids2_trim150_scaffold_1265_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14464..14781
DNA (318bp) protein (106aa)
Thioredoxin n=1 Tax=Niabella soli DSM 19437 RepID=H1NJX3_9SPHI
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
thioredoxin; K03671 thioredoxin 1
scnpilot_solids2_trim150_scaffold_1265_12
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15012..17726
DNA (2715bp) protein (905aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L105_HALH1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE51592.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
Displaying 12 items

View Taxonomy