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scnpilot_solids2_trim150_scaffold_1424

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1424_1
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1046
DNA (1044bp) protein (348aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
DNA primase; K02316 DNA primase [EC:2.7.7.-]
DNA primase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RV62_9RHIZ
scnpilot_solids2_trim150_scaffold_1424_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1268..3268
DNA (2001bp) protein (667aa)
RNA polymerase sigma factor RpoD n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E332BF rbh
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor rbh
scnpilot_solids2_trim150_scaffold_1424_3
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3314..3604
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LNJC380A00 RepID=V7GNI2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESY78240.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
transcription activator HlyU
scnpilot_solids2_trim150_scaffold_1424_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3801..4604
DNA (804bp) protein (268aa)
lytic transglycosylase n=1 Tax=Afipia birgiae RepID=UPI000319ED9D
lytic murein transglycosylase
Lytic murein transglycosylase {ECO:0000313|EMBL:ABD86554.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
scnpilot_solids2_trim150_scaffold_1424_5
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5026..5400)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031CF714
Cation:proton antiporter {ECO:0000313|EMBL:ETR77578.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
putative monovalent cation/H+ antiporter subunit G; K05564 multicomponent K+:H+ antiporter subunit G
scnpilot_solids2_trim150_scaffold_1424_6
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5397..5678)
DNA (282bp) protein (94aa)
Cation:proton antiporter n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SF20_9RHIZ
Cation:proton antiporter {ECO:0000313|EMBL:AHB49092.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
phaF; ph adaptation potassium efflux system protein F
scnpilot_solids2_trim150_scaffold_1424_7
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5675..6169)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000378D497
Monovalent cation/H+ antiporter subunit E {ECO:0000313|EMBL:EXL10516.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
monovalent cation/H+ antiporter subunit E; K05562 multicomponent K+:H+ antiporter subunit E
scnpilot_solids2_trim150_scaffold_1424_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6166..7794)
DNA (1629bp) protein (543aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000364D478 rbh
Cation:proton antiporter {ECO:0000313|EMBL:AHB49090.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
putative monovalent cation/H+ antiporter subunit D; K05561 multicomponent K+:H+ antiporter subunit D rbh
scnpilot_solids2_trim150_scaffold_1424_9
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7794..8135)
DNA (342bp) protein (114aa)
cation:proton antiporter n=1 Tax=Kaistia granuli RepID=UPI00036F888E
Monovalent cation/H+ antiporter subunit C {ECO:0000313|EMBL:EXL10518.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
phaC; putative monovalent cation/H+ antiporter subunit C; K05560 multicomponent K+:H+ antiporter subunit C
scnpilot_solids2_trim150_scaffold_1424_10
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8135..11050)
DNA (2916bp) protein (972aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036E1D99 rbh
Monovalent cation/H+ antiporter subunit A {ECO:0000313|EMBL:EZQ17696.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
putative monovalent cation/H+ antiporter subunit A; K05559 multicomponent K+:H+ antiporter subunit A rbh
scnpilot_solids2_trim150_scaffold_1424_11
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11433..12344)
DNA (912bp) protein (304aa)
Amidohydrolase 2 n=1 Tax=alpha proteobacterium BAL199 RepID=A8TMC5_9PROT rbh
Amidohydrolase 2 {ECO:0000313|EMBL:EDP65727.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
amidohydrolase 2; K07046 rbh
scnpilot_solids2_trim150_scaffold_1424_12
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12353..13639)
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI000378CC8D rbh
Contig17, whole genome shotgun sequence {ECO:0000313|EMBL:ETA51169.1}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium PD-2.;"
TRAP dicarboxylate transporter subunit DctM rbh
scnpilot_solids2_trim150_scaffold_1424_13
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13636..14109)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003807F03
Contig17, whole genome shotgun sequence {ECO:0000313|EMBL:ETA51170.1}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium PD-2.;"
tripartite AtP-independent periplasmic transporter subunit DctQ
scnpilot_solids2_trim150_scaffold_1424_14
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(14207..15187)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035C948D rbh
TRAP dicarboxylate transporter subunit DctP rbh
Tax=RBG_16_NC10_65_8_curated
scnpilot_solids2_trim150_scaffold_1424_15
unknown

Not on your lists

15365..15598
DNA (234bp) protein (78aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1424_16
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15595..15774
DNA (180bp) protein (60aa)
Putative membrane protein {ECO:0000313|EMBL:AJA08657.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
scnpilot_solids2_trim150_scaffold_1424_17
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15836..15976
DNA (141bp) protein (47aa)
MazG family protein; K04765 ATP diphosphatase [EC:3.6.1.8]
MazG family protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GTN8_SPHAL
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
Displaying 17 items

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